Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1642
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL133040-1|CAB61368.1| 1350|Homo sapiens hypothetical protein pr...    30   6.2  
AJ243706-1|CAB63108.1| 1681|Homo sapiens RB-binding protein prot...    30   6.2  
AJ132440-1|CAB43532.1| 1544|Homo sapiens PLU-1 protein protein.        30   6.2  
AF087481-1|AAD16061.1| 1580|Homo sapiens retinoblastoma binding ...    30   6.2  

>AL133040-1|CAB61368.1| 1350|Homo sapiens hypothetical protein
           protein.
          Length = 1350

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 450 MAHTFFDVCVLRLQDFIIRLTFGRYAILVSDHYSLSIVYPYY 325
           +AH   D+C ++L    + + F  +   + DH+S SI Y ++
Sbjct: 278 LAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHW 319


>AJ243706-1|CAB63108.1| 1681|Homo sapiens RB-binding protein
           protein.
          Length = 1681

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 450 MAHTFFDVCVLRLQDFIIRLTFGRYAILVSDHYSLSIVYPYY 325
           +AH   D+C ++L    + + F  +   + DH+S SI Y ++
Sbjct: 609 LAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHW 650


>AJ132440-1|CAB43532.1| 1544|Homo sapiens PLU-1 protein protein.
          Length = 1544

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 450 MAHTFFDVCVLRLQDFIIRLTFGRYAILVSDHYSLSIVYPYY 325
           +AH   D+C ++L    + + F  +   + DH+S SI Y ++
Sbjct: 472 LAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHW 513


>AF087481-1|AAD16061.1| 1580|Homo sapiens retinoblastoma binding
           protein 2 homolog 1 protein.
          Length = 1580

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 450 MAHTFFDVCVLRLQDFIIRLTFGRYAILVSDHYSLSIVYPYY 325
           +AH   D+C ++L    + + F  +   + DH+S SI Y ++
Sbjct: 508 LAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHW 549


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,476,949
Number of Sequences: 237096
Number of extensions: 1439339
Number of successful extensions: 2084
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)