Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1641
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.4  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    26   4.2  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   5.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   5.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.3  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   9.6  

>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 384 KTTCLDKLRYTSFVKNTRNKKQVNLASLPPTSVAAHQHLFRVYYQVQVWLGNQLDPKDWG 205
           +++ L+ + Y    +  R K  + LAS  P  VA  + LF    +++      L  +D  
Sbjct: 167 QSSLLNTMEYNKEQEVIRKKYLIGLASRTPEEVAEEEALFIELKRIETSQAKLLSDRDEV 226

Query: 204 WKLID 190
            +L+D
Sbjct: 227 LRLLD 231


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = -2

Query: 135 NTIFCNCKKG----CSAKCGCRKVGLFC---SLACTHCQGRSC 28
           +T  C  K+G    C +KCGC+     C   S A  +C+  SC
Sbjct: 3   HTTQCKSKQGKPCDCQSKCGCQDCKESCGCKSSAVDNCKCSSC 45


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 522 KTAVFKMFEKKDLLQ--CAEVFKNSNSTQQHVI 430
           K AVFK FEK++L Q  C++V +    T   +I
Sbjct: 352 KGAVFKKFEKENLFQLTCSDVVERFQITIMVII 384


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 324 FYYAYFS-RKMCIATYLSKWFF 386
           +YY + S R +  AT++++WFF
Sbjct: 346 YYYEFTSPRTISTATFIARWFF 367


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 24  SSMIGLDSVCMPGNKTVQLFCNHILHY-TLSCSCKILC*EVSQVLVEVKFELALVYCRST 200
           ++++ +D V +  NKT Q   NH   + T+     I   +  +  V V++  A  Y  ST
Sbjct: 469 TALLFIDDVLLIDNKTKQTPTNHTFEFGTIEERNSIYLKKGRKYNVRVEYGSAATYTLST 528

Query: 201 S-NPSL*GPADYQATLELGNIPETDVD 278
           + +PS  G         +   PET++D
Sbjct: 529 NLSPSTGGRYSIGCVKVID--PETEID 553


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 240 WLGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLLNTIFCNC 115
           +L ++LD    GW LI  +L  V  ++  APE  L T   NC
Sbjct: 792 FLDSKLDHS--GWSLISKSLSEVFKIINVAPE--LRTRAANC 829


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 462 KNSNSTQQHVITNGVQFILAMYGAPKKTTCLDKLRYTSFVKNTRNKKQVNLAS 304
           K+S  + ++ + NG +  ++    PKK   LD       V N  NK+ V LAS
Sbjct: 32  KSSLHSSENSLVNGKKATVSSTNVPKKRHALDD------VSNFHNKEGVPLAS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,178
Number of Sequences: 5004
Number of extensions: 46030
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)