Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1641
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 33 0.11
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 31 0.79
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 30 1.4
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 29 1.8
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 3.2
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 28 4.2
02_01_0650 - 4838977-4839078,4839179-4839196,4839371-4839528,483... 28 4.2
01_01_0681 + 5235623-5235873,5235958-5236285,5236786-5236935,523... 27 7.4
03_01_0012 - 101584-101898,102274-102531,102932-103474 27 9.8
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 123 CNCKKGCSAK--CGCRKVGLFCSLACTHCQGRSCSNVES 13
C+CKK K C C G+FCS C+ CQG C N+ S
Sbjct: 479 CSCKKSKCLKLYCECFHAGVFCSEPCS-CQG--CLNMPS 514
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 30.7 bits (66), Expect = 0.79
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 123 CNCKKGCSAK--CGCRKVGLFCSLACTHCQG 37
C+CKK K C C G++CS C+ CQG
Sbjct: 470 CSCKKSKCLKLYCECFAAGVYCSEPCS-CQG 499
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 123 CNCKKGCSAK--CGCRKVGLFCSLACTHCQGRSCSN 22
CNCK+ K C C + G+ CS++C C+ +C N
Sbjct: 550 CNCKRSYCVKKYCECFQSGVGCSMSC-RCE--NCKN 582
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 123 CNCKKG-CSAK-CGCRKVGLFCSLACTHCQGRSCSNVES 13
C CK+ C K C C K +FCS C C G C N +S
Sbjct: 263 CKCKRTECLKKYCECFKASVFCSENC-RCTG--CKNYKS 298
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -2
Query: 123 CNCKKGCSAKCGCRKVGLFCSLACTHC 43
C C C CG R FC + C C
Sbjct: 33 CRCYHECLPNCGLRNSRSFCKVFCGSC 59
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 123 CNCKKGCSAKCGCRKVGLFCSLACTHCQGRSCSN 22
C C++ C C C + G C C C +SC N
Sbjct: 454 CGCQQMCGKDCACVENGTCCEKYC-GC-SKSCKN 485
>02_01_0650 -
4838977-4839078,4839179-4839196,4839371-4839528,
4839663-4839895,4840345-4840631,4841391-4841819
Length = 408
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -3
Query: 149 LRNFSTQYFATARKGVVQNVVAEKLDCFVPWHAHTVKADHARMLSHQL 6
L++ S + F K +VQN+ ++ WH+ + D M+ ++L
Sbjct: 352 LKSISQEEFVELHKSLVQNISCPQVQKHFVWHSPPLPYDAFHMVMYEL 399
>01_01_0681 +
5235623-5235873,5235958-5236285,5236786-5236935,
5237255-5237503,5238581-5238670,5238781-5238966,
5239477-5239598,5242915-5243011
Length = 490
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 228 QLDPKDWGWKLIDNTLEPVQTLLPPAPEKLLN 133
+L P +GW ++ TLE V P PE ++
Sbjct: 48 RLPPGSFGWPVVGETLEFVSCAYSPRPEAFVD 79
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 177 PVQTLLPPAPEKLLNTIFCNCKKGCSAKCGCRKV 76
P + LL P+P L T C KG A C +V
Sbjct: 19 PTRRLLSPSPSASLTTTTVRCSKGEMAVVKCIRV 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,379
Number of Sequences: 37544
Number of extensions: 283613
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -