Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1641
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 30 1.2
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.2
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.2
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.2
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.2
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 30 1.2
U53335-6|AAA96171.2| 518|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine re... 29 2.9
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 28 3.8
AL021492-5|CAA16385.2| 157|Caenorhabditis elegans Hypothetical ... 28 3.8
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 27 8.8
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 27 8.8
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 27 8.8
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 27 8.8
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 27 8.8
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 27 8.8
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical
protein ZK287.1 protein.
Length = 497
Score = 31.9 bits (69), Expect = 0.31
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = -2
Query: 153 APEKLLN----TIFCNCKKG---CSAK-CGCRKVGLFCSLACTHCQGRSCSN 22
AP+KL T C C KG C K C CR V FCS +C C G C+N
Sbjct: 101 APKKLAKVAKPTSGCQCAKGKKQCVKKECACRTVYGFCSASC-KC-GGDCTN 150
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -2
Query: 120 NCKKGCSAKCG--CRKVGLFCSLACTH 46
NC CSAKCG C FC+ C H
Sbjct: 1795 NCGHTCSAKCGESCPPCKAFCTNKCEH 1821
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 180 EPVQTLLPPAPEKLLNTIFCN-CKKGCSAKCGCRKVGLFCSLACTHCQGRSCSNVES 13
E +Q L +K N F + CKK C +CG + +L C H CS + S
Sbjct: 1553 EHLQRCLYNCDKKCSNPQFQHRCKKACYEECGSCLYLVEVTLDCGHRITTPCSRINS 1609
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 165 LLPPAPEKLLNTIFCNCKKGCSAKCGCR 82
LLPP EK LN F K GC CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 165 LLPPAPEKLLNTIFCNCKKGCSAKCGCR 82
LLPP EK LN F K GC CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 111 KGCSAKCGCRKVGLFCSLACTHC-QGRSCSNV 19
K CS KC K G C+L C C G +C ++
Sbjct: 713 KTCSEKCPDGKYGYGCALDCPKCASGSTCDHI 744
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -2
Query: 123 CNCKKG-----CSAKCGCRKVGLFCSLACTHCQGRSCS 25
C C+ G CS C K G C L+C C SCS
Sbjct: 575 CTCQPGFFGSDCSTTCSKGKYGESCELSCP-CSDASCS 611
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 111 KGCSAKCGCRKVGLFCSLACTHC-QGRSCSNV 19
K CS KC K G C+L C C G +C ++
Sbjct: 713 KTCSEKCPDGKYGYGCALDCPKCASGSTCDHI 744
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -2
Query: 123 CNCKKG-----CSAKCGCRKVGLFCSLACTHCQGRSCS 25
C C+ G CS C K G C L+C C SCS
Sbjct: 575 CTCQPGFFGSDCSTTCSKGKYGESCELSCP-CSDASCS 611
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 111 KGCSAKCGCRKVGLFCSLACTHC-QGRSCSNV 19
K CS KC K G C+L C C G +C ++
Sbjct: 713 KTCSEKCPDGKYGYGCALDCPKCASGSTCDHI 744
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -2
Query: 123 CNCKKG-----CSAKCGCRKVGLFCSLACTHCQGRSCS 25
C C+ G CS C K G C L+C C SCS
Sbjct: 575 CTCQPGFFGSDCSTTCSKGKYGESCELSCP-CSDASCS 611
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 111 KGCSAKCGCRKVGLFCSLACTHC-QGRSCSNV 19
K CS KC K G C+L C C G +C ++
Sbjct: 713 KTCSEKCPDGKYGYGCALDCPKCASGSTCDHI 744
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -2
Query: 123 CNCKKG-----CSAKCGCRKVGLFCSLACTHCQGRSCS 25
C C+ G CS C K G C L+C C SCS
Sbjct: 575 CTCQPGFFGSDCSTTCSKGKYGESCELSCP-CSDASCS 611
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 165 LLPPAPEKLLNTIFCNCKKGCSAKCGCR 82
LLPP EK LN F K GC CR
Sbjct: 512 LLPPLKEKFLNWKFTAKKYGCRGDVSCR 539
>U53335-6|AAA96171.2| 518|Caenorhabditis elegans Hypothetical
protein C55C3.5 protein.
Length = 518
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 237 LGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLLNTIFCNC 115
L LD DW ++ +D + ++PP + L+T+ C
Sbjct: 289 LNEILDQIDWNFEWMDEQIPVTSPIIPPDSREFLSTLCSEC 329
>AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine
receptor, class t protein24 protein.
Length = 362
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 317 TCFLLRVFFTKDVYRNLSKQVVFLGAPYIARIN*TPLVITCC*VELLFLKTSAHCSKSFF 496
TC LL + DV NL + +F+G + ++ P++ T + F KT+ SF
Sbjct: 137 TCVLLGINRCCDVNHNLKMRTIFIGKKFYLTLS-VPIIYTI--YAIFFTKTA-----SFN 188
Query: 497 SNILKTAVFPLL 532
SN + PLL
Sbjct: 189 SNYISWFFNPLL 200
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
protein C10C6.6 protein.
Length = 1178
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 237 LGNQLDPKDWGWKLIDNTLEPVQTLLPPAPEKLLNTIFCNCKKGC 103
L D DW WK +D T+E L P K+ F N + C
Sbjct: 726 LDEPADGVDWMWKSVDGTIE--LPLKPETKNKMERKAFFNSHEFC 768
>AL021492-5|CAA16385.2| 157|Caenorhabditis elegans Hypothetical
protein Y45F10D.10 protein.
Length = 157
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +3
Query: 9 LVTQHSSMIGLDSVCMPGNKTVQLFCNHILHYTLSCSCKILC*EVSQVLVEVKFELALVY 188
L+T ++ G ++ T + H+L T S ILC V +E + AL+
Sbjct: 88 LLTTYADGFGRTNIVFVEKSTTTRYQLHLLQATDDASSNILCNLVKNAFIEAEEASALIE 147
Query: 189 CRSTSNPSL 215
+PS+
Sbjct: 148 VIEPPSPSI 156
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 80 KLDCFVPWHAH 48
+L CFVPWH+H
Sbjct: 556 ELACFVPWHSH 566
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 80 KLDCFVPWHAH 48
+L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 222 DPKDWGWKLIDNTL 181
D + WGW L+DN L
Sbjct: 238 DDQSWGWNLVDNVL 251
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 80 KLDCFVPWHAH 48
+L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 80 KLDCFVPWHAH 48
+L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 80 KLDCFVPWHAH 48
+L CFVPWH+H
Sbjct: 591 ELACFVPWHSH 601
>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
protein C44E4.7 protein.
Length = 1145
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 521 KQQFSKCLKKKIYYNVLKFLKIVIQLNNMLSPTEFNLF 408
KQ F K L++K +L+ K++IQ + + NLF
Sbjct: 612 KQLFDKLLEQKYQEGLLQDTKLIIQKTDKYLSSSLNLF 649
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,889,818
Number of Sequences: 27780
Number of extensions: 271325
Number of successful extensions: 899
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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