Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1639
         (584 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6SLN5 Cluster: Predicted protein; n=1; Botryotinia fuc...    34   2.8  
UniRef50_Q0Z882 Cluster: NADH dehydrogenase subunit 5; n=2; Merm...    33   3.8  
UniRef50_P45320 Cluster: Uncharacterized sodium-dependent transp...    33   6.6  
UniRef50_Q1QD49 Cluster: Polysaccharide biosynthesis protein; n=...    32   8.7  

>UniRef50_A6SLN5 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 449

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 543 TWYPSWRSTCETPRSKHVSSDLKCW 469
           TW PSW ST E  R++ ++ DL  W
Sbjct: 185 TWIPSWNSTIEEERTQFMADDLSQW 209


>UniRef50_Q0Z882 Cluster: NADH dehydrogenase subunit 5; n=2;
           Mermithidae|Rep: NADH dehydrogenase subunit 5 -
           Agamermis sp. BH-2006
          Length = 490

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
 Frame = +1

Query: 22  IVLLVWS*LFFYKDLTSFSYSLGFEL---F*IMSILLKSTAFMTLFSF-YFVEVGFLF 183
           +V+L ++ ++ Y+ +TSF   L F++   F ++ I+L    FMTLFS+ +F+   F F
Sbjct: 353 LVILSFTIIYSYRLITSFKMFLNFKMSVNFKMLGIILTYLMFMTLFSYMWFLNWFFSF 410


>UniRef50_P45320 Cluster: Uncharacterized sodium-dependent
           transporter HI1690; n=36; Proteobacteria|Rep:
           Uncharacterized sodium-dependent transporter HI1690 -
           Haemophilus influenzae
          Length = 457

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
 Frame = +1

Query: 73  FSYSLGFELF*IMSILLKS------TAFMTLFSFYFVEV--GFLFC*KLYCDG-KTNIEP 225
           F+ SLGF +   +S  L        TA +T F+   + V  GF+    L+  G + N  P
Sbjct: 238 FALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGP 297

Query: 226 CCVLYAKPIAPSHVSINILFCILFKNILLLMSSQYQLSVF 345
             V  + PI  SH+     F I+F  +LL+ +    ++++
Sbjct: 298 TLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIY 337


>UniRef50_Q1QD49 Cluster: Polysaccharide biosynthesis protein; n=1;
           Psychrobacter cryohalolentis K5|Rep: Polysaccharide
           biosynthesis protein - Psychrobacter cryohalolentis
           (strain K5)
          Length = 475

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 25  VLLVWS*LFFYKDLTSFSYSLGFELF*IMSILLK-STAFMTLFSFYFVEVG 174
           +L +WS   FY     F + L  + + ++SI++  +TAF+++ + YF++ G
Sbjct: 124 ILYIWSNGLFYLIQNQFRWELRSKEYAVISIIMSVATAFVSVLAAYFLDYG 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,793,119
Number of Sequences: 1657284
Number of extensions: 8818249
Number of successful extensions: 19282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19270
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)