Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1639
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    28   0.87 
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   4.7  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   6.2  

>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 424 SYISGYRL*VSASGLPALKITANMFATRC 510
           S + GY    S++ LP L++T N   T+C
Sbjct: 397 SLLHGYHFMASSTELPWLRVTCNAIVTKC 425


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 452 FLPVAYQHLRSLLTCLLRGVSHVE 523
           F+  A+QHL+SL T    G  ++E
Sbjct: 16  FIKRAFQHLKSLFTVCFTGADYLE 39


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 399 QYFKSHYDFIYIWISPLSFCQWPTST 476
           +YF  ++  +  W  P   C W +ST
Sbjct: 236 EYFPVYHKLLLFWQKPARKCWWDSST 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,938
Number of Sequences: 5004
Number of extensions: 40073
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)