Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1639
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   2.7  
06_03_0196 - 17784747-17784833,17786061-17786333,17787982-177881...    28   4.8  
04_04_0549 - 26179668-26181176                                         27   8.3  

>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 395 SSIF*ISLRFHIYLDIAFEFLPVAYQHLRSLLTCLLRGVSHVERHDGY 538
           S +  +S+ F  +L I  +  PV YQ L  L TCL+    +V  HD +
Sbjct: 188 SCLISVSVNFSTFLVIG-KTSPVTYQVLGHLKTCLVLAFGYVLLHDPF 234


>06_03_0196 -
           17784747-17784833,17786061-17786333,17787982-17788166,
           17788267-17788381
          Length = 219

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 395 SSIF*ISLRFHIYLDIAFEFLPVAYQHLRSLLTCLLRGVSHVERHDGYH 541
           S +  +S+ F  +L I     PV YQ L  L TCL+    ++  HD ++
Sbjct: 106 SCLIAVSVNFSTFLVIGTTS-PVTYQVLGHLKTCLVLSFGYILLHDPFN 153


>04_04_0549 - 26179668-26181176
          Length = 502

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +2

Query: 431 YLDIAFEFLPVAYQHLRSL-----LTCLLRGVSHVERH 529
           + D A +F     QH R L     L+CL+ G+SH   H
Sbjct: 108 FFDAAMQFGDAVAQHCRRLTGPRRLSCLIAGISHTWAH 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,987,326
Number of Sequences: 37544
Number of extensions: 220512
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)