Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1639
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.          30   6.9  
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni...    30   6.9  
BC060758-1|AAH60758.1|  556|Homo sapiens MED1 protein protein.         30   6.9  
BC006517-1|AAH06517.1|  777|Homo sapiens PPARBP protein protein.       30   6.9  
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte...    30   6.9  
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    30   6.9  

>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
          Length = 1566

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -1

Query: 470 GRPLAETQRRYPDIYEIVMRFKI--------LN*NANAFKLLPPSAHIY 348
           G PL ETQ  Y  +YE++ +F++        LN N   +  LP   H Y
Sbjct: 311 GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCY 359


>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
           protein.
          Length = 1581

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -1

Query: 470 GRPLAETQRRYPDIYEIVMRFKI--------LN*NANAFKLLPPSAHIY 348
           G PL ETQ  Y  +YE++ +F++        LN N   +  LP   H Y
Sbjct: 326 GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCY 374


>BC060758-1|AAH60758.1|  556|Homo sapiens MED1 protein protein.
          Length = 556

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -1

Query: 470 GRPLAETQRRYPDIYEIVMRFKI--------LN*NANAFKLLPPSAHIY 348
           G PL ETQ  Y  +YE++ +F++        LN N   +  LP   H Y
Sbjct: 326 GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCY 374


>BC006517-1|AAH06517.1|  777|Homo sapiens PPARBP protein protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -1

Query: 470 GRPLAETQRRYPDIYEIVMRFKI--------LN*NANAFKLLPPSAHIY 348
           G PL ETQ  Y  +YE++ +F++        LN N   +  LP   H Y
Sbjct: 326 GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCY 374


>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
           receptor-interacting protein complex component DRIP205
           protein.
          Length = 1566

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -1

Query: 470 GRPLAETQRRYPDIYEIVMRFKI--------LN*NANAFKLLPPSAHIY 348
           G PL ETQ  Y  +YE++ +F++        LN N   +  LP   H Y
Sbjct: 311 GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCY 359


>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP220
           protein.
          Length = 1581

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = -1

Query: 470 GRPLAETQRRYPDIYEIVMRFKI--------LN*NANAFKLLPPSAHIY 348
           G PL ETQ  Y  +YE++ +F++        LN N   +  LP   H Y
Sbjct: 326 GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCY 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,255,383
Number of Sequences: 237096
Number of extensions: 1295958
Number of successful extensions: 2319
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2319
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)