Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1639
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 402 YFKSHYDFIYIWISPLSFCQWPTST 476
           Y  S YD I  W+ PL+ C +  ST
Sbjct: 285 YEDSTYDDINQWVYPLTGCLYYFST 309



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +1

Query: 214 NIEPCCVLYAKPIAPSHVSINILFCILFKNILLLMSSQYQLSVF 345
           NI  C V++  P   +  +  +    +   + L++   ++LSVF
Sbjct: 51  NIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGLPFELSVF 94


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 503 RGVSHVERHDGYHVSTG 553
           R + H +RH   H+STG
Sbjct: 189 RVLGHRQRHSTIHLSTG 205


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 155 NENNVINAVDFNKILII*NNSKPNE*LKLVRSL 57
           N+NN++     N ++ +  N +  E +KL  SL
Sbjct: 261 NDNNIVRPDFINMLMELQKNPQKLENIKLTDSL 293


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 214 NIEPCCVLYAKPIAPSHVSINILFCILFKNILLLMSSQYQLSVF 345
           NI  C V+   P   +  +  +    +   ILL++    +LS+F
Sbjct: 58  NITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSLF 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,274
Number of Sequences: 438
Number of extensions: 2937
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)