Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1636
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368,631...    29   1.1  
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    27   5.6  
08_02_1205 + 25273727-25273916,25274238-25274353                       26   9.8  
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420...    26   9.8  
04_03_0349 - 14738360-14738385,14738762-14738807,14738887-147391...    26   9.8  

>03_02_0193 +
           6312518-6312554,6312948-6313091,6313214-6313368,
           6313596-6313871,6313957-6314081,6314234-6314351,
           6314663-6314740,6318972-6319059,6319241-6319297,
           6319398-6319405
          Length = 361

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 8   YITAVTLGFIKLNKTPFLKPLHV*PIDRRLNLD 106
           YI  + +G +KL+   FL P+HV  I R+ N+D
Sbjct: 247 YIPRLHIG-MKLSAMKFLDPIHVEKISRKCNID 278


>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 308 SNTHQLNCISNVRTVNRFV 252
           SNTHQ N I+++ TV +FV
Sbjct: 165 SNTHQENVITSMETVMKFV 183


>08_02_1205 + 25273727-25273916,25274238-25274353
          Length = 101

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 219 NDGSCEIFS*IYKTINCPYITYTIKLVGITASR 317
           +DG   IFS ++     P+ T+TI LV +T+++
Sbjct: 69  DDGITSIFSGVHGFGFSPWYTFTIALVEVTSTQ 101


>04_03_0379 +
           15141127-15141231,15141566-15141769,15141856-15142037,
           15142898-15143036,15143111-15143299,15143943-15144050,
           15144143-15144222,15144549-15144600,15144731-15144799,
           15144876-15144910,15145351-15145510,15147414-15147470,
           15147566-15147622,15147971-15148027,15148126-15148182,
           15148551-15148670,15148760-15148996,15149550-15149591
          Length = 649

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 308 SNTHQLNCISNVRTVNRFVYLTEDLT 231
           SNTHQ + IS + T+ +FV   ED+T
Sbjct: 164 SNTHQEHVISYMETIMKFV--IEDIT 187


>04_03_0349 -
           14738360-14738385,14738762-14738807,14738887-14739123,
           14739213-14739332,14739702-14739758,14740262-14740318,
           14740412-14740468,14742372-14742531,14742972-14743006,
           14743083-14743151,14743282-14743333,14743660-14743739,
           14743832-14743939,14744583-14744771,14744846-14744984,
           14745845-14746026,14746113-14746316,14746651-14746755
          Length = 640

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 308 SNTHQLNCISNVRTVNRFVYLTEDLT 231
           SNTHQ + IS + T+ +FV   ED+T
Sbjct: 164 SNTHQEHVISYMETIMKFV--IEDIT 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,197,457
Number of Sequences: 37544
Number of extensions: 121707
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)