Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1633
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.53 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 315 NLKLVPKPRLCCRVCANISYLRMSLSDTERRANF 416
           N+KL   P  CC +C N + L  S  +  ++  F
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIF 751



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 321 KLVPKPRLCCRVCANISY 374
           K +   + CC+ CA + Y
Sbjct: 789 KRIYNEKQCCKNCARVDY 806


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 634 DFVLHRQGDAKGFSGADLTEICQRACKLGHSPGHRAEIH 518
           D  +H+Q   +  S  +L+ +  R   L  S  H+A +H
Sbjct: 310 DLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLH 348


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 176 DRPELTSCLFVLRVAPPHQHGAWPRPV 96
           D PE++  L  + V     HG W R V
Sbjct: 692 DVPEISKYLDFINVMTYDFHGQWERTV 718


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 176 DRPELTSCLFVLRVAPPHQHGAWPR 102
           D P L + L  + V     HGAW R
Sbjct: 818 DLPALGTVLDFMSVMTYDYHGAWER 842


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 110 WPRPVHV 90
           WP+PVH+
Sbjct: 78  WPKPVHI 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,966
Number of Sequences: 336
Number of extensions: 3045
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)