Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1633
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    81   2e-16
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    31   0.11 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.75 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   4.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.2  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.2  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
            Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 52/127 (40%), Positives = 68/127 (53%)
 Frame = -1

Query: 601  GFSGADLTEICQRACKLGHSPGHRAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEE 422
            GFSGADL  + QRA KL        +I RE          V+ MDE+  V ++ R H EE
Sbjct: 700  GFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEAPADDVV-MDEDASVSQVQRHHVEE 758

Query: 421  AMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEG 242
            AMK ARRSVSD ++R+YE +A  L  SRG  T F+F +             + P+F  +G
Sbjct: 759  AMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQFDS--------ADSNTNGPSFGNDG 809

Query: 241  GDDDLYS 221
              DDLY+
Sbjct: 810  A-DDLYA 815


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 26/91 (28%), Positives = 38/91 (41%)
 Frame = -1

Query: 628 VLHRQGDAKGFSGADLTEICQRACKLGHSPGHRAEIHRERSRXXXXXXAVMDMDEEDPVP 449
           VL R      FSGADL  + + A          A+I             +      +P+ 
Sbjct: 686 VLGRDERCSNFSGADLAALVREAAVTALRSAVFADIASNEPE-------ITQHSALEPI- 737

Query: 448 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 356
            ++ A FE A K  + SVSD D +KY+  A+
Sbjct: 738 RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 454 VPEISRAHFEEAMKFARRSVSDNDIRKYE 368
           +P IS  HF+ +++  R SVS   I +YE
Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 300  ELQGARVLQRATSPRSRRRGVTTTCTAKLCLA 205
            +L+ A  LQ+   PR+RR+G T   +AK  LA
Sbjct: 1411 KLKAAERLQKPAIPRTRRKGHTEPKSAKSLLA 1442


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 300 ELQGARVLQRATSPRSRRRGVTTTCTAKLCLARDL 196
           ELQ   V   + SPR R  GVT   TA++   R +
Sbjct: 60  ELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKI 94


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 195 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 97
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 504 RLLSRWISARWPGEWPSLQA 563
           +LLS  I A WP E PSL A
Sbjct: 900 QLLSALILAPWPSETPSLLA 919


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 631 FVLHRQGDAKGFSGADLTEICQRA 560
           ++LH      G+ GADL  +C  A
Sbjct: 569 YLLHLAESTSGYGGADLKALCTEA 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,834
Number of Sequences: 5004
Number of extensions: 49441
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)