Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1584
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   2.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   5.3  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   9.2  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 320 GEYVITTVNLFVRDHCLTKCSLNHTPWTLMKIEQLIFVKNSRISILIL 463
           G Y+ + + L    HC+ +C L++  WT     + +F+ +S + ++ L
Sbjct: 138 GVYLYSILILLFLSHCVLRCCLSNWSWT----HRAMFILHSMVILMKL 181


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 528 SNRSSSFGAYSKQTNKQIFPLYN-ISIDILLFFTKISCSIFINVHG 394
           +N  ++     K   K++ P Y    I IL+F   + CS+ I V G
Sbjct: 63  NNNENNEAFNEKAAEKKLLPWYRRYFIWILIFIVALICSVLIGVLG 108


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -2

Query: 570 FIRDNVGF*WKKNFSNRSSSFGAYSKQTNKQIFPLYNISIDILLFFTKISCSIFIN 403
           +   +VG  W + +SN + +  AYS +  K++       +     F +   S+F N
Sbjct: 51  YFEASVGI-WIEEYSNLAETLDAYSSEEAKEVIDSLGAIVYTFRSFDEAEWSLFKN 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,141
Number of Sequences: 5004
Number of extensions: 45191
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)