Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1584
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006648-2|AAF39862.1|  297|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    28   4.9  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC006648-2|AAF39862.1|  297|Caenorhabditis elegans Hypothetical
           protein F59H6.4 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 506 PKLLDRFEKFFFH*KPTLSLMNIGYFIYLFIFCFM 610
           P +L RF++      P   L+ IG F+ +FI CF+
Sbjct: 201 PDILHRFKRQVGSGPPLFILILIGVFVLIFITCFV 235


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 228 RLDIKLRINSILEQLAMVYPVI*RGLNTRYHRIKTELL 115
           RL    + N ILE+L    P+I +G   ++H++K + L
Sbjct: 557 RLKNSDKCNEILEKLTAARPLISQGKTHKFHKMKADYL 594


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 554 TLSLMNIGYFIYLFIFCFMCVLM 622
           TL    +G+F+  +IF  MC++M
Sbjct: 476 TLKGRELGFFVIFYIFAVMCIVM 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,425
Number of Sequences: 27780
Number of extensions: 247822
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)