Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1583
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   7.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.3  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.6  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 179 LHSKSSRRMFKFIILYNIFRKYLLKVKRNTRYFLESSNPYFSISQVDRKPFG 334
           +H    R+ F+   LYN     +L  ++  R  + S +PY+    + RKP G
Sbjct: 520 IHDPQFRKSFRDK-LYNAGVVTVLATQKGVRK-IGSEHPYYEFKYLKRKPLG 569


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 RKYLLKVKRNTRYFLESSNPYFSISQVDRKP 328
           RK    ++R    F   SNP+  +S++DR P
Sbjct: 83  RKVSGSIQRLASNFKNPSNPHADVSKIDRLP 113


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 DIFSKVLIPISPLVKLTANRS 332
           D+FS  L P+SPL  L A+ S
Sbjct: 38  DVFSSALKPLSPLKSLVADFS 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,085
Number of Sequences: 5004
Number of extensions: 40170
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)