Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1583
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    28   7.5  
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252...    28   7.5  

>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
            5748588-5748714,5748800-5749119,5749202-5749963,
            5750749-5750898,5751007-5751096,5751196-5751340,
            5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 203  MFKFIILYNIFRKYLLKVKRNTRYFLESSNP 295
            M  F+   NI R+Y LK    +RY L+S NP
Sbjct: 1375 MENFLFGRNIIRRYDLKGALFSRYVLDSKNP 1405


>01_06_0499 +
           29823578-29823754,29823882-29824002,29825103-29825227,
           29825338-29825432,29825890-29825994,29826103-29826899,
           29827100-29827154,29827930-29828035,29828126-29828268,
           29828816-29829038
          Length = 648

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 79  NFKKEHNSAYRNKYFHSTNYSECVLVSVISFSKTP-FKIFPKN 204
           +F  + +S + NKY HST+      V+  +FS+ P  KIF ++
Sbjct: 291 DFTVDDDSVHSNKYEHSTSGPTETTVNGNNFSRVPSMKIFDRS 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,607
Number of Sequences: 37544
Number of extensions: 187031
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)