Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1581
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.51 
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   0.89 
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   6.3  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   6.3  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   8.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 177  TTPHFQFIN*LKTQTKPTVSTTRLSTISASAR*NYPH 287
            TT H+Q      T T+PT + ++L      +   YPH
Sbjct: 1179 TTNHWQTKTTTSTTTRPTTTVSQLIDDKCDSGQYYPH 1215


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 418 QTREGHHVDRQLAQVGVQL 362
           Q R+ H VD QL Q+G  L
Sbjct: 28  QMRQVHEVDNQLKQMGCDL 46


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 403 ALPASALLHARLRADDVTRQPGSTGRLPC 489
           +LP   +L  R RA +++   G+  RL C
Sbjct: 31  SLPQFKVLGHRQRAMEISLTTGNYSRLAC 59


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 403 ALPASALLHARLRADDVTRQPGSTGRLPC 489
           +LP   +L  R RA +++   G+  RL C
Sbjct: 213 SLPQFKVLGHRRRAVEISLTTGNYSRLAC 241


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 363 CPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQIS 253
           C G+ +  V P +++ T + +  Y   +SF   + I+
Sbjct: 59  CEGSCKSQVQPSVITPTGFLKECYCCRESFLRERTIT 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,768
Number of Sequences: 336
Number of extensions: 2369
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)