Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1581
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 217 1e-57
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 130 2e-31
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 124 8e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 111 4e-26
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.1
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 2.1
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 3.7
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 6.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 8.5
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 25 8.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 8.5
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 217 bits (529), Expect = 1e-57
Identities = 102/154 (66%), Positives = 117/154 (75%)
Frame = +2
Query: 2 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 181
E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVVEPYN
Sbjct: 125 EACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYN 184
Query: 182 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG 361
ATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG
Sbjct: 185 ATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPG 244
Query: 362 QLNADLRKLAVNMVPFPRLHFFMPGFAPMTSRGS 463
+LN+DLRKLAVNMVPFPRLHFFM GFAP+ + GS
Sbjct: 245 ELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGS 278
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 130 bits (313), Expect = 2e-31
Identities = 59/151 (39%), Positives = 89/151 (58%)
Frame = +2
Query: 2 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 181
++C LQGF ++ EY + +SV P+P+VS +VVEPYN
Sbjct: 131 DNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYN 190
Query: 182 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG 361
+ L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G
Sbjct: 191 SVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAG 250
Query: 362 QLNADLRKLAVNMVPFPRLHFFMPGFAPMTS 454
LN DL + N+VP+PR+HF + ++P+ S
Sbjct: 251 SLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 124 bits (299), Expect = 8e-30
Identities = 57/151 (37%), Positives = 87/151 (57%)
Frame = +2
Query: 2 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 181
++C LQGF ++ EY + +SV P+P+VS +VVEPYN
Sbjct: 127 DNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYN 186
Query: 182 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG 361
+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G
Sbjct: 187 SVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEG 246
Query: 362 QLNADLRKLAVNMVPFPRLHFFMPGFAPMTS 454
LN DL + N+VP+PR+HF + +AP+ S
Sbjct: 247 SLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 111 bits (268), Expect = 4e-26
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Frame = +2
Query: 2 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDTVVEPY 178
+ D L+GF ++ + YP +I+ TYSV P S VSD VV+PY
Sbjct: 127 DGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPY 186
Query: 179 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFP 358
N+ L++ +L N D +DN AL I L PT+ N LVS MS TT LR+P
Sbjct: 187 NSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYP 246
Query: 359 GQLNADLRKLAVNMVPFPRLHFFMPGFAPMTSRGSQE 469
G +N DL + +++P PR HF + + P T++ +E
Sbjct: 247 GYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEE 283
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.1
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 200 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 379
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 380 RKLAVNMV 403
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 387 SLRRSAFSCPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQI 256
+LR NR ++ P ++ R R YVG +F RKQI
Sbjct: 679 ALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQI 722
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 3.7
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Frame = +2
Query: 179 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN-HLVSLTMSGVTTC--- 346
N S+ + +EN + + AL D+ + +K T DLN L SLT+ T
Sbjct: 550 NTNQSLKKNLENGRAEFRLKEIALIDLANQQIKNQDKTIHDLNTELCSLTLDYCNTAVER 609
Query: 347 --LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPMTSRGSQE 469
LRF D K N +P+ ++ F +P + S E
Sbjct: 610 DTLRFRALEYLDHNK-QTNPLPYHIVYMFSFETSPTVFQTSPE 651
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 215 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 319
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 176 YNATLSVHQLVENTDETYCI 235
+N L+V+ +V N DET+ I
Sbjct: 1419 FNVCLAVNTIVNNVDETFSI 1438
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 154 VGHSSRTVQRHTFSSSIS 207
+GHSS+ +Q H F SIS
Sbjct: 289 LGHSSKKLQTHPFFCSIS 306
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 24.6 bits (51), Expect = 8.5
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 301 PEPPGVADHVRRDDVPAVPRTAERRPAQAGG-QHGALPASAL 423
P PPG V + DVP + A GG GAL S L
Sbjct: 49 PPPPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVL 90
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LNHLVSLTMSGVTTCLRFPGQLN 370
L HLV + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 8.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -1
Query: 329 TWSATPGGSGRRMWVW 282
+W+ +PG G++ W W
Sbjct: 381 SWNLSPGPRGQKAWEW 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,910
Number of Sequences: 5004
Number of extensions: 35612
Number of successful extensions: 121
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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