Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1581
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 409  PASALLHARLRADDVTRQPGSTGRLP 486
            P +A  H+R  +  + RQ G   R+P
Sbjct: 1766 PTNASAHSRSGSQSMPRQNGRYSRVP 1791


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 403 ALPASALLHARLRADDVTRQPGSTGRLPC 489
           +LP   +L  R RA +++   G+  RL C
Sbjct: 184 SLPQFKVLGHRQRAMEISLTTGNYSRLAC 212


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 IHTHIRRPEPPGVADHVRRDDVPAVPR-TAERRP 378
           ++ H R P+   +A  V+R  +  +PR    RRP
Sbjct: 329 LNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 IHTHIRRPEPPGVADHVRRDDVPAVPR-TAERRP 378
           ++ H R P+   +A  V+R  +  +PR    RRP
Sbjct: 329 LNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 280 IHTHIRRPEPPGVADHVRRDDVPAVPR 360
           ++ H R P+   +A  VRR  +  +PR
Sbjct: 325 LNVHFRSPQTHVMAPWVRRVFIHVLPR 351


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 14/53 (26%), Positives = 18/53 (33%)
 Frame = +1

Query: 157 GHSSRTVQRHTFSSSIS*KHRRNLLYRQRGSLRYLLPHAKTIHTHIRRPEPPG 315
           GHS      H   S  +  H ++       S    +    T H H   PE PG
Sbjct: 422 GHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPG 474


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 92  IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 214
           +R      I + + ++ +PKVS+       ATLS  +++ N
Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 403 ALPASALLHARLRADDVTRQPGSTGRLPC 489
           +LP   +L  R RA +++   G+  RL C
Sbjct: 123 SLPQFKVLGHRQRAMEISLTTGNYSRLAC 151


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 22  GIPTDTLARRRHRFRYGHP 78
           GIP+ TL +R HR     P
Sbjct: 438 GIPSTTLWQRAHRLGIDTP 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,050
Number of Sequences: 438
Number of extensions: 2597
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)