Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1580
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0083 - 629885-631189                                             29   4.4  
12_01_0084 - 678324-679643                                             28   5.9  

>11_01_0083 - 629885-631189
          Length = 434

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +3

Query: 69  RVHFSRPRQXXXXXXXXXXXXNQILMIHISQQI------LRACSHSDISELHLVRTANKV 230
           +VH++R  +             QIL + +S+QI      +R  +H +I +LH V      
Sbjct: 25  KVHYARNLESNQSVAIKMMDKQQILKVGLSEQIRREITTMRLVAHKNIVQLHEVMATRNK 84

Query: 231 LYYFHQF 251
           +Y+  ++
Sbjct: 85  IYFVMEY 91


>12_01_0084 - 678324-679643
          Length = 439

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +3

Query: 69  RVHFSRPRQXXXXXXXXXXXXNQILMIHISQQI------LRACSHSDISELHLVRTANKV 230
           +VH++R  +             Q+L + +S+QI      +R  +H +I +LH V      
Sbjct: 25  KVHYARNLESNQSVAIKMMDKQQVLKVGLSEQIRREITTMRLVAHKNIVQLHEVMATRNK 84

Query: 231 LYYFHQF 251
           +Y+  ++
Sbjct: 85  IYFVMEY 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,337
Number of Sequences: 37544
Number of extensions: 257901
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)