Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1580
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.86 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 6/15 (40%), Positives = 14/15 (93%)
 Frame = -2

Query: 103 ATACLGRLKWTRIRL 59
           AT C+GR++W+++++
Sbjct: 123 ATRCIGRIQWSKLQV 137


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 148 YIFLNKYLGPVRTAIFRNYT*YALR 222
           +  +N Y+GPV T   + Y+   LR
Sbjct: 294 FAVVNNYMGPVATKAMKGYSDEDLR 318


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 562 FIPQCEHSHTYFIRSKYS 615
           F P+C+ S   F+R+++S
Sbjct: 151 FFPECKWSRKGFLRTRWS 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,062
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)