Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1579
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22N16 Cluster: KOW motif family protein; n=1; Tetrahym...    38   0.21 
UniRef50_Q1CU43 Cluster: Outer membrane protein HofC; n=4; Helic...    33   7.8  
UniRef50_Q11SJ1 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  
UniRef50_O77332 Cluster: Putative uncharacterized protein MAL3P3...    33   7.8  

>UniRef50_Q22N16 Cluster: KOW motif family protein; n=1; Tetrahymena
           thermophila SB210|Rep: KOW motif family protein -
           Tetrahymena thermophila SB210
          Length = 778

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 548 VVVEISTIINWNCKFVHYYDCILYFYNHKFRQDYTKKNIN 429
           ++++      + C+ +H Y  +++ +N KFR  YT +NIN
Sbjct: 615 IIIKQGQYSGYQCQVIHVYKSLVFLFNPKFRDTYTVENIN 654


>UniRef50_Q1CU43 Cluster: Outer membrane protein HofC; n=4;
           Helicobacter|Rep: Outer membrane protein HofC -
           Helicobacter pylori (strain HPAG1)
          Length = 528

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 518 WNCKFVHYYDCILYFYNHKFRQDYTKKNI--NKDK*YLIYSHFDNRRQEQ 375
           WN  F +YY    Y   H  R +  K N+  + D+ +++   FD   QEQ
Sbjct: 153 WNGLFPNYYPANAYLPGHSRRYEVYKANLTYDSDRVHMVMGRFDVTEQEQ 202


>UniRef50_Q11SJ1 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 569

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 160 SKNFVSLFTKIARTEEYEIFHTYREYREEVHNANIFFK 273
           SK F  LF ++  T EY  F   R  R+++H A + FK
Sbjct: 153 SKAFEKLFMELYATSEYIEFINLRASRDDIHQAAVIFK 190


>UniRef50_O77332 Cluster: Putative uncharacterized protein MAL3P3.16;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            MAL3P3.16 - Plasmodium falciparum (isolate 3D7)
          Length = 1673

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -2

Query: 614  VVESK*RENYLFLFYDRTRC*TVVVEISTIINWNCKFVHYYDCILYFYN 468
            +VE+K +E++ FLF  + +    ++ +S + N+  K+ + Y C+  F N
Sbjct: 1030 IVENKCKESFDFLFNHKDKKQKKIISLSVVSNYEKKYPYEYLCLNNFIN 1078


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,023,797
Number of Sequences: 1657284
Number of extensions: 10920516
Number of successful extensions: 23673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23660
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)