Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1578
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    28   0.64 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.0  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    25   6.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   7.9  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -3

Query: 366 ENMPSSEARLKKNRCSSCFDC----PSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKM 199
           E  P+  AR + N   S FD     P  Y   S  +  +   Q      GK+EN + K  
Sbjct: 471 EMSPTYTARHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVNQDTELL-GKIENDNSKSN 529

Query: 198 YYLACFNCRWTSRDV 154
            YL+  N R  SR +
Sbjct: 530 DYLSVRNTRPRSRSL 544


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 136 CCIRWMARETKSICNTNKSTLRILQGNSITRETG 35
           CCI +  R   S+   NKS  RI + N+  +E G
Sbjct: 730 CCIFYAYRACSSLFGENKSHKRIEKTNTSPQEPG 763


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 305 QSKQLLQRFFFNLASDDGIFSRG 373
           Q K+L+QRFF  ++ D G +  G
Sbjct: 279 QEKKLIQRFFDEISLDSGKYCFG 301


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = +3

Query: 15   ILFFQFSPVSLVMLLPCNILRVDLFVLQMDLVSLAIHLMQQADQEFPHL*M---SIYN*N 185
            ++F +FSP+   ++     + V+ F   +  +   I +++Q  QEF    +   S+   N
Sbjct: 895  LIFTEFSPIREAVVFAIGCINVNAFPQLVRSLKPYISVLKQDHQEFIFAGLNFPSVKRRN 954

Query: 186  KLNSTSFFDVCFLLSHLQHLLAAEV 260
            K +     ++  + +   HLL  E+
Sbjct: 955  KPDLLLRSEIAHIFAMTSHLLLHEL 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,196
Number of Sequences: 5004
Number of extensions: 37637
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)