Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1578
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 31 0.35
02_04_0213 + 20974712-20975413 31 0.35
11_06_0479 + 24076860-24077809,24078700-24079321 30 0.81
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 29 1.1
03_05_0437 - 24293236-24294120 29 1.9
01_01_0374 - 2919425-2919529,2919645-2920319 29 1.9
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 27 4.3
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 27 4.3
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 27 5.7
06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581,793... 27 5.7
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 27 7.6
04_04_1691 - 35393728-35394585 27 7.6
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 31.1 bits (67), Expect = 0.35
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 214 FVFYFPISSTFLLPRLDQASSGGQSVVATGTIKAAAATVLL 336
F F+ P +T+ + R D+A GG +VA+G + AA VLL
Sbjct: 14 FAFFPPEPATYAV-RKDEACGGGGRLVASGVPRDAAVDVLL 53
>02_04_0213 + 20974712-20975413
Length = 233
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 226 FPISSTFLLPRLDQASSGGQSVVATGTIKAA 318
+P SST D A+SGGQ+V AT + AA
Sbjct: 40 WPFSSTMATADDDDAASGGQAVAATAPVAAA 70
>11_06_0479 + 24076860-24077809,24078700-24079321
Length = 523
Score = 29.9 bits (64), Expect = 0.81
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 288 CGSNWDNQSSCCNGSSLIWLLMMAYSRGGARY 383
CG W +Q CN ++ W + A +G +RY
Sbjct: 114 CGIEWGSQLCACNPATRRWATLPAARQGPSRY 145
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -1
Query: 383 VPGPPSRICHHQKPD*RRTVAAAALIVPVATTLCPPELAWSNLGSKKVLE 234
+P PP R HH R +AAAA V A LC G KK+LE
Sbjct: 52 LPFPPERAAHH------RELAAAAAAVERACRLCVDVKRTLLSGDKKILE 95
>03_05_0437 - 24293236-24294120
Length = 294
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 233 SPAPSCCRGWTKLALVDKVW*QLGQSKQLLQRF 331
S AP CRGW + A +W L + L RF
Sbjct: 36 SAAPLVCRGWRRAAADPSLWRALDLRRDHLARF 68
>01_01_0374 - 2919425-2919529,2919645-2920319
Length = 259
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 306 CPSCYHTLSTRASLVQPRQQEGAG 235
CP C ++T SLV+P GAG
Sbjct: 132 CPVCKRKMATEVSLVEPDDVSGAG 155
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +3
Query: 309 QSSCCNGSSLIWLLMMAYSRGGAR---YPIRPIVSR 407
Q SC NG S I L AYS G R +PI R
Sbjct: 474 QPSCANGQSQISLGSTAYSEGSTRVLGFPINAAAER 509
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -1
Query: 335 RRTVAAAALIVPVATTLCPPELAWSNLGSKKVLEMGK*KTNIKKRCTI*LVSIVDGHLEM 156
R AAAA TT P E+ WS V +G T ++ R S+ G L +
Sbjct: 50 REAAAAAASTSSTTTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAI 109
Query: 155 WE 150
W+
Sbjct: 110 WK 111
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 268 LGPTSAARRCWRWESRKQTSKKDVLFSLF 182
L PT+ W+WES Q S K +LF
Sbjct: 1059 LDPTTPDSIIWKWESSGQYSSKSAYKALF 1087
>06_01_1014 -
7936514-7936530,7936768-7936859,7937290-7937581,
7937690-7937759,7938131-7938223
Length = 187
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 372 PLENMPSSEARLKKNRCSSCFDCP-SCY 292
P +M SSE +N C C+D P SC+
Sbjct: 109 PESSMCSSEDMCSENVCKICYDAPRSCF 136
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 18 LFFQFSPVSLVMLLPCNILRVDLFVLQMDLVSLAIHLMQQADQEFPHL 161
L + P+ L C+ R+ + ++ +D +S I MQ+ DQ PHL
Sbjct: 474 LIRELVPMLLSARFSCHTHRL-VALVYLDTISRYIKFMQENDQYVPHL 520
>04_04_1691 - 35393728-35394585
Length = 285
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 395 RANWVPGPPSRICHHQKPD*RRTVAAAALIVPVATTL 285
+ +W+ + HHQ+PD V A P TTL
Sbjct: 133 KTDWIIHEYRLVAHHQQPDGSCWVVCRAFHKPTTTTL 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,363,170
Number of Sequences: 37544
Number of extensions: 305869
Number of successful extensions: 914
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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