Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1578
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical pr...    69   1e-12
Z82264-8|CAB05153.1|  706|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    27   3.9  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    27   3.9  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    27   6.9  
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    26   9.1  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    26   9.1  
AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical...    26   9.1  

>U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical
           protein C26B2.1 protein.
          Length = 413

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
 Frame = -3

Query: 357 PSS--EARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLAC 184
           PSS  EARLKK++C+SC DCP C + LS R                 EN +     YL C
Sbjct: 55  PSSVPEARLKKHKCASCNDCPKCANVLSART----------------ENDN----VYLVC 94

Query: 183 FNCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKAIALQEKQEKIEKKGSA 10
             CRW+SR+    DQ      WP + NP   Q+ ++  Y K + L E   K  KKG +
Sbjct: 95  QYCRWSSREANQEDQENTKS-WPTKENPLVNQLGEVTAYMKRLELIENAPKDLKKGKS 151


>Z82264-8|CAB05153.1|  706|Caenorhabditis elegans Hypothetical
           protein C49C3.1 protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 279 WTKCGSNWDNQSSC 320
           W +CG++W+N  SC
Sbjct: 163 WNRCGNSWNNAESC 176


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 321 SSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMY 196
           SSC+D P  YH L   AS  Q R  E  G     +KH+  +Y
Sbjct: 461 SSCYDLPYAYHILMKDAS--QNRTMERRG-----SKHRSSLY 495


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = -3

Query: 339 LKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACFNCRWTSR 160
           +++ +CS+      C      + S+ QP  Q+   D  V N HQ ++  L    C++T  
Sbjct: 88  MQRCKCSNEPQSSGCSCANKAQTSVCQPSCQKSCVDSCVRNSHQPQL--LCDKTCQFTCN 145

Query: 159 DVGIPDQPVAS 127
               P    +S
Sbjct: 146 KACTPSTSTSS 156


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 372 PLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLV-QPRQQEGAGDGKVENKHQKKMY 196
           PLE  PS E +L+     S       ++T+STR+S    PR++    D K   K  KK  
Sbjct: 66  PLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGTPRKKMEPEDVKPNIKMLKKSL 125

Query: 195 YLACFNC 175
            ++ F C
Sbjct: 126 PVS-FQC 131


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 372 PLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLV-QPRQQEGAGDGKVENKHQKKMY 196
           PLE  PS E +L+     S       ++T+STR+S    PR++    D K   K  KK  
Sbjct: 66  PLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGTPRKKMEPEDVKPNIKMLKKSL 125

Query: 195 YLACFNC 175
            ++ F C
Sbjct: 126 PVS-FQC 131


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 372 PLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLV-QPRQQEGAGDGKVENKHQKKMY 196
           PLE  PS E +L+     S       ++T+STR+S    PR++    D K   K  KK  
Sbjct: 66  PLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGTPRKKMEPEDVKPNIKMLKKSL 125

Query: 195 YLACFNC 175
            ++ F C
Sbjct: 126 PVS-FQC 131


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 372 PLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLV-QPRQQEGAGDGKVENKHQKKMY 196
           PLE  PS E +L+     S       ++T+STR+S    PR++    D K   K  KK  
Sbjct: 66  PLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGTPRKKMEPEDVKPNIKMLKKSL 125

Query: 195 YLACFNC 175
            ++ F C
Sbjct: 126 PVS-FQC 131


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
           protein.
          Length = 1966

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 315 CFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLAC 184
           C+   S +  +       +PR+++   DG VE +    MY + C
Sbjct: 350 CYRLMSAHMHMGNMKFKQRPREEQAEPDGTVEAEKASNMYGIGC 393


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
 Frame = -3

Query: 330 NRC---SSCFDCPSCY---HTLSTRASLVQPRQQEGAGDGKVE-----NKHQKKMYYLAC 184
           N+C      F C  CY   H  ST +S  +   +  + D  ++      + +  +Y+LAC
Sbjct: 134 NKCFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLAC 193

Query: 183 FNCRWTSRDVGIPDQ 139
           F+C    R +   ++
Sbjct: 194 FSCNQCKRQLSTGEE 208


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
 Frame = -3

Query: 330 NRC---SSCFDCPSCY---HTLSTRASLVQPRQQEGAGDGKVE-----NKHQKKMYYLAC 184
           N+C      F C  CY   H  ST +S  +   +  + D  ++      + +  +Y+LAC
Sbjct: 134 NKCFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLAC 193

Query: 183 FNCRWTSRDVGIPDQ 139
           F+C    R +   ++
Sbjct: 194 FSCNQCKRQLSTGEE 208


>AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical
           protein Y75B8A.12 protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 124 WMARETKSICNTNKSTLRILQGNS 53
           W +RE  SI     STL+I++GN+
Sbjct: 159 WGSREYTSILACGNSTLQIIEGNN 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,621
Number of Sequences: 27780
Number of extensions: 230320
Number of successful extensions: 753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)