Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1577
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 161 8e-41
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 153 2e-38
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 147 1e-36
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 142 3e-35
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 142 4e-35
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.97
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 1.7
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 6.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.0
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 9.0
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.0
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 9.0
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 161 bits (391), Expect = 8e-41
Identities = 71/199 (35%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Frame = +3
Query: 3 AAYHCMLRERTNQCIVIXXXXXXXXXXXXNFLLHHLTALSQKGSHG---SGVEQTILSAG 173
+ YH + + NQ I++ +++ +LT++ +G VE +L+
Sbjct: 141 SCYHALTTDSKNQTIIVSGESGAGKTVAAKYIMRYLTSVQGVDHNGVVKRSVENQVLATN 200
Query: 174 PVLEAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYH 353
P++EAFGNAKT N+NSSRFGK++ +++ EN ++ GA V YLLE+SR+ S + ERNYH
Sbjct: 201 PIMEAFGNAKTIRNDNSSRFGKYVTISFDENLLITGANVNTYLLERSRVVSLLKGERNYH 260
Query: 354 VFYYLLAGASEQEREQLHLLSVDKYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMD 533
+FY L+ G +E++R++ L S +NYLS+ C ++ G D+ +F+ +++ +G +
Sbjct: 261 IFYQLITGCTEEQRDKWFLESASSFNYLSQGNCDEISGVDDSNDFTITCRALSTIGISES 320
Query: 534 KQRRLFAVLSAVLLLGNVE 590
+Q +F +L+A+L LGN+E
Sbjct: 321 RQEDVFCLLAALLHLGNIE 339
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 153 bits (372), Expect = 2e-38
Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 2/198 (1%)
Frame = +3
Query: 3 AAYHCMLRERTNQCIVIXXXXXXXXXXXXNFLLHHLTALSQKGSHGSG-VEQTILSAGPV 179
AAY +L R NQ I++ ++ +LT+++ + S +E+ IL PV
Sbjct: 164 AAYRSLLERRINQSILVTGESGAGKTETTKKVIQYLTSVTDASTSDSQQLEKKILETNPV 223
Query: 180 LEAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVF 359
LEAFGNA+T NNNSSRFGKFI++ + NG + GA + YLLEKSR+ NERNYHVF
Sbjct: 224 LEAFGNAQTVRNNNSSRFGKFIRIEFSNNGSIVGANLDWYLLEKSRVIHPSSNERNYHVF 283
Query: 360 YYLLAGASEQEREQLHL-LSVDKYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDK 536
Y LL GA E L L VD Y+YL K G + G D+ EF +L + +GF ++
Sbjct: 284 YQLLRGADGSLLESLFLDRYVDHYSYL-KNGLKHINGVDDGKEFQKLCFGLRTLGFDNNE 342
Query: 537 QRRLFAVLSAVLLLGNVE 590
LF +++++L +GN+E
Sbjct: 343 IHSLFLIIASILHIGNIE 360
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 147 bits (356), Expect = 1e-36
Identities = 77/215 (35%), Positives = 124/215 (57%), Gaps = 12/215 (5%)
Frame = +3
Query: 6 AYHCMLRERTNQCIVIXXXXXXXXXXXXNFLLHHLT---ALSQKGSHG-------SGVEQ 155
+Y CM +E NQ I+I +++ + AL Q + VE
Sbjct: 150 SYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQALIQSTDSNFHEAPQLTAVEN 209
Query: 156 TILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGR 335
IL+ P++EAFGN+KT+ N+NSSRFGK+IQ+ + N + GA +Q YLLE+SR+ Q
Sbjct: 210 EILATNPIMEAFGNSKTSRNDNSSRFGKYIQILFDGNATIIGAKIQTYLLERSRLVFQPN 269
Query: 336 NERNYHVFYYLLAGASEQEREQLHLL-SVDKYNYLSKTGCSDVPGTDEQYEFSRLKQSME 512
ERNYH+FY +LAG+S ++ E+ L+ + ++NYL + CS + G +++ EF +++
Sbjct: 270 QERNYHIFYQILAGSSSEQLEKWKLVENSQEFNYLKQGNCSTIEGVNDKEEFKATVDALK 329
Query: 513 MVGFTMDKQRRLFAVLSAVLLLGNVEF-HPNEKSY 614
VG D +F++L+A+L +GN+E H +Y
Sbjct: 330 TVGIDNDTCECIFSLLAALLHIGNIEVKHSRNDAY 364
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 142 bits (345), Expect = 3e-35
Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 2/197 (1%)
Frame = +3
Query: 6 AYHCMLRERTNQCIVIXXXXXXXXXXXXNFLLHHLTALSQKGSHGSG-VEQTILSAGPVL 182
AY+ +L + NQ I++ ++ +L A++ + GS VE+ I+ PVL
Sbjct: 153 AYNNLLENKENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQIIKTNPVL 212
Query: 183 EAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFY 362
E+FGNA+T NNNSSRFGKFI+V + +G + A ++ YLLEKSR+ Q ERNYHVFY
Sbjct: 213 ESFGNARTVRNNNSSRFGKFIKVEFSLSGEISNAAIEWYLLEKSRVVHQNEFERNYHVFY 272
Query: 363 YLLAGASEQEREQLHLL-SVDKYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDKQ 539
LL+GA + +L L + + Y YL K + G D++ EF L + + +GF +
Sbjct: 273 QLLSGADTALKNKLLLTDNCNDYRYL-KDSVHIIDGVDDKEEFKTLLAAFKTLGFDDKEN 331
Query: 540 RRLFAVLSAVLLLGNVE 590
LF +LS +L +GN++
Sbjct: 332 FDLFNILSIILHMGNID 348
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 142 bits (344), Expect = 4e-35
Identities = 70/201 (34%), Positives = 113/201 (56%), Gaps = 1/201 (0%)
Frame = +3
Query: 6 AYHCMLRERTNQCIVIXXXXXXXXXXXXNFLLHHLTALSQK-GSHGSGVEQTILSAGPVL 182
AY+ M NQCI+I ++ ++T +S+ G+ V + IL+ P+L
Sbjct: 116 AYYQMKSYHENQCIIISGESGAGKTEAAKRIMQYITHVSKSVGTEIERVSEIILATNPLL 175
Query: 183 EAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFY 362
E+FG AKT NNNSSR GK++++ + G+ GA + YLLEK+RI +Q RNERN+H+FY
Sbjct: 176 ESFGCAKTLRNNNSSRHGKYLEMIFNSGGVPVGAKITNYLLEKNRIVNQVRNERNFHIFY 235
Query: 363 YLLAGASEQEREQLHLLSVDKYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDKQR 542
A ++ R+ + + Y Y S C V G ++ +F +M+++G T +Q
Sbjct: 236 QFTKSAPQKYRDTYGIQGPENYVYTSACQCLSVDGISDEKDFQGTMNAMKVIGITEPEQD 295
Query: 543 RLFAVLSAVLLLGNVEFHPNE 605
+F +LS +L LGN++F +
Sbjct: 296 EIFRMLSIILWLGNIQFQEGQ 316
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 0.97
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 295 NTYWKSREYAAKVATRGIITYFITYW 372
N SREY A+VA I+ ITYW
Sbjct: 98 NCILDSREYRAQVADAQILNLAITYW 123
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 567 VLLLGNVEFHPNEKS 611
V L+GN+EFH NE S
Sbjct: 125 VFLIGNIEFHSNENS 139
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 301 YWKSREYAAKVATRGIITYFITYWRVLRNRRENSYIYSVWT 423
YW +A+ + Y YW L+NR + +Y ++T
Sbjct: 117 YWTRFTTSARFINH-LFGYLNRYWVKLKNRFTETLVYDIYT 156
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 420 DKYNYLSKTGCSDVPGTDEQYEFSRLKQSM 509
D NYL+ TG + DE + F+R +Q +
Sbjct: 167 DSQNYLTLTGRKTIIFLDEVHRFNRAQQDI 196
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 111 TALSQKGSHGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 245
T +K +HGS + T S L++FG + + SS F + +
Sbjct: 38 TVSGRKSNHGSSLTDTGESDQLSLKSFGAIRQPSQHRSSLFSRML 82
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 426 YNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTM 530
+N S S+ P +D++ +FSRL + FT+
Sbjct: 257 FNLFSLRSSSNNPDSDQESQFSRLPDERATMFFTI 291
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 216 NNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQER 395
N++S GK +N+ M+HG + Y + ++ + E V YLL A +
Sbjct: 43 NSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQYA--EFN 100
Query: 396 EQLHLLSVD 422
L LLSV+
Sbjct: 101 PDLALLSVN 109
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 509 GDGGLHHGQTTEVICCSLSSSVIR 580
G+ GL G T +IC SSS IR
Sbjct: 541 GEEGLDIGDTDMIICYDASSSPIR 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,533
Number of Sequences: 5004
Number of extensions: 51168
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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