Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1576
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   369   e-101
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   216   3e-55
UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2; Tricho...    35   1.5  
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    34   2.6  
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ...    33   4.6  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  
UniRef50_Q1FFI1 Cluster: RNA binding S1; n=7; Clostridiales|Rep:...    33   6.1  
UniRef50_A1SUA2 Cluster: Metal dependent phosphohydrolase; n=2; ...    33   6.1  
UniRef50_A7P845 Cluster: Chromosome chr3 scaffold_8, whole genom...    33   6.1  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   6.1  
UniRef50_A5ZNR6 Cluster: Putative uncharacterized protein; n=5; ...    33   8.0  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  369 bits (908), Expect = e-101
 Identities = 160/204 (78%), Positives = 188/204 (92%)
 Frame = +2

Query: 17  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 196
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 197 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 376
           GKNQKLTLFKEIR+VKPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 377 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNI 556
           ++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPSYVG NNEYRISLAKKGGGCP+MN+
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGCPVMNL 187

Query: 557 HSEYTNSFESFVNRVIWENFYKPI 628
           H+EYT SFESF+++VIW NFYKPI
Sbjct: 188 HAEYTTSFESFIDKVIWYNFYKPI 211


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  216 bits (528), Expect = 3e-55
 Identities = 92/200 (46%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
 Frame = +2

Query: 32  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 211
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 212 LTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 391
           + +F+E+R++K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE  DV+L     P +
Sbjct: 71  MVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIRCTPNK 130

Query: 392 PNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYT 571
            NR Y+FLAQH LR +ED+VP + IR++EP Y+   N   +SL K+ GGCP+M I  ++ 
Sbjct: 131 SNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYL-QGNTVSLSLLKRDGGCPMMKIRQQFN 189

Query: 572 N-SFESFVNRVIWENFYKPI 628
               E FV+R++W +F++PI
Sbjct: 190 ELDLEQFVDRILWCHFHRPI 209


>UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2;
           Trichomonas vaginalis G3|Rep: CMGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 340

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 95  NAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD-TMKLIVN 271
           N ++     +H+  E QW+L DNY + +   +G GK    T+FK +   + +  +K++V 
Sbjct: 20  NQQKGPEWYDHKSYEPQWNLPDNYSLIKK--VGRGKYS--TVFKAVHKRRTECAIKILVP 75

Query: 272 WSGKEFLRE 298
              K +LRE
Sbjct: 76  LDPKRYLRE 84


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 278 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 448
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 623

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 264 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 443
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 444 TT-CPTK*SELWSHPT 488
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 264 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 431
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


>UniRef50_Q1FFI1 Cluster: RNA binding S1; n=7; Clostridiales|Rep:
           RNA binding S1 - Clostridium phytofermentans ISDg
          Length = 279

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
 Frame = +2

Query: 164 YMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVND 343
           Y  +ED  +      KLTL KEI  +K   +  I  +      ++ +  F E + P++ D
Sbjct: 56  YKDSEDRPIATQTTPKLTL-KEIAVLKVKEVTTIGAFLDWGIAKDLFLPFKEQTHPVIAD 114

Query: 344 QEVM-DVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEP--SYVGMNNEYRI 514
           +EV+  +Y+  + +     + Y  L   +   ++D V   V  I+    ++V ++N+Y  
Sbjct: 115 EEVLVSLYIDKSKRLCATMKIYDMLQTDSPYGKDDKVTGIVYEIIPAFGAFVAVDNKYSA 174

Query: 515 SLAKK 529
            +  K
Sbjct: 175 LIPNK 179


>UniRef50_A1SUA2 Cluster: Metal dependent phosphohydrolase; n=2;
           Proteobacteria|Rep: Metal dependent phosphohydrolase -
           Psychromonas ingrahamii (strain 37)
          Length = 286

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 574 VGVLAVNVHDWAAAALFSQTNSVFVVHAHVGW 479
           VG+L +++ DWA A LF  ++++ V     GW
Sbjct: 16  VGILWISLSDWAVALLFQDSDNIIVAQNIKGW 47


>UniRef50_A7P845 Cluster: Chromosome chr3 scaffold_8, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr3 scaffold_8, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 2001

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -1

Query: 616 KVLPYDAVHKRLERVGVLAVNVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGH--VV 443
           KVLP   +    E   +L V V     A + S+   +  V   VG++H+ DYF GH  ++
Sbjct: 383 KVLPLSGIG---ELFHLLVVQVKKQKGALVLSEGTKI--VGKTVGFIHSEDYFSGHMSMM 437

Query: 442 FFPPKSVLSE 413
           F    SVLSE
Sbjct: 438 FAGNHSVLSE 447


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -3

Query: 74   FCNIYCRTR----KYARWWGCMNNSAY 6
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


>UniRef50_A5ZNR6 Cluster: Putative uncharacterized protein; n=5;
           Bacteria|Rep: Putative uncharacterized protein -
           Ruminococcus obeum ATCC 29174
          Length = 227

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 395 NRCYKFLAQ--HALR-WEEDYVPHEVIRIVEPSYV 490
           NRC++ LA   H LR W ++Y PH    +  P +V
Sbjct: 127 NRCFRILADYLHLLRVWRKEYAPHSPEEVFHPRFV 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,178,629
Number of Sequences: 1657284
Number of extensions: 15450809
Number of successful extensions: 46297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 43975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46219
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)