Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1575
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 207 1e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 96 4e-21
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 8e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 77 2e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 61 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 54 2e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 53 3e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.6
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 10.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 207 bits (506), Expect = 1e-54
Identities = 94/104 (90%), Positives = 99/104 (95%)
Frame = -1
Query: 598 AGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 419
AGIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+A
Sbjct: 272 AGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVA 331
Query: 418 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 287
PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = -2
Query: 675 VITIGNERFRCPEAFFQPSFLG 610
VITIGNERFR PEA FQPS LG
Sbjct: 247 VITIGNERFRAPEALFQPSALG 268
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/104 (41%), Positives = 72/104 (69%)
Frame = -1
Query: 598 AGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 419
+G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A
Sbjct: 277 SGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYA 336
Query: 418 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 287
PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 337 SPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 672 ITIGNERFRCPEAFFQPSFLG 610
IT+G E F PE F P +G
Sbjct: 253 ITLGTECFSAPEVLFNPEMMG 273
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 96.3 bits (229), Expect = 4e-21
Identities = 47/111 (42%), Positives = 73/111 (65%), Gaps = 6/111 (5%)
Frame = -1
Query: 604 KLAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 425
++ GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI
Sbjct: 323 RILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKI 381
Query: 424 IAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 290
A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 382 HASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 8e-21
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -1
Query: 595 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 422
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 421 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 314
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 663 GNERFRCPEAFFQPSFLGYGSLRASTRP 580
G ERFR E F PSF S A T P
Sbjct: 292 GQERFRISEILFNPSF--SASRSAETTP 317
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 77.0 bits (181), Expect = 2e-15
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 12/106 (11%)
Frame = -1
Query: 595 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APST 440
G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L P+
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPAR 332
Query: 439 M---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 314
+ K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 333 LPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 34.3 bits (75), Expect = 0.016
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 675 VITIGNERFRCPEAFFQPSFLG 610
VI +G+ER+ CPE FQP +G
Sbjct: 247 VIKVGSERYECPECLFQPHLVG 268
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Frame = -1
Query: 601 LAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST------ 440
L + E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 304 LTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEM 363
Query: 439 --------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 296
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 364 LSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 672 ITIGNERFRCPEAFFQP 622
I +G ERF PE FF P
Sbjct: 280 IDVGFERFLAPEIFFNP 296
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/102 (30%), Positives = 49/102 (48%)
Frame = -1
Query: 598 AGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 419
AGI E S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+
Sbjct: 298 AGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFE 357
Query: 418 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 293
P + W S + L + I++ EY E G +I+ RK
Sbjct: 358 PSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 675 VITIGNERFRCPEAFFQPS 619
V+ + NERF PE F PS
Sbjct: 273 VLNLSNERFMIPELLFSPS 291
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = -1
Query: 670 HYRKRKIPVPRG-FLPTLVSWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 494
H +I VP F P++V AGI E + + + ++ ++ L +N +++GG
Sbjct: 590 HLNVEQIRVPEVIFSPSIVGI--DQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSL 647
Query: 493 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 314
PG+ R+++E+T++ P I + W G S + F+ ++++EY E G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 313 PSIV 302
P +
Sbjct: 708 PEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 541 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 371
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 370 SLSTFQQMWISKQEYDESGPSIVHRK 293
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 394 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 293
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 402 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 307
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 469 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 359
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 512 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 333
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 332 GV 327
V
Sbjct: 534 AV 535
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 495 YMVVPPDNTVLAYKSLRMSTSHFMMELYVVSWMPASFHTQETRVGRKPLGTGI 653
Y+ + PD + S +M+ FM + +PAS H VG + + I
Sbjct: 88 YLKLNPDRVAMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANSDI 140
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 335 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 421
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,375
Number of Sequences: 5004
Number of extensions: 54704
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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