Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1575
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             182   4e-48
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.66 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  182 bits (442), Expect = 4e-48
 Identities = 85/86 (98%), Positives = 86/86 (100%)
 Frame = -1

Query: 595 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 416
           GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP
Sbjct: 48  GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 107

Query: 415 PERKYSVWIGGSILASLSTFQQMWIS 338
           PE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 108 PEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 675 VITIGNERFRCPEAFFQPSFLG 610
           VITIGNERFRCPEA FQPSFLG
Sbjct: 22  VITIGNERFRCPEALFQPSFLG 43



 Score = 24.6 bits (51), Expect = 0.87
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3

Query: 623 PRFLGMEACG 594
           P FLGMEACG
Sbjct: 39  PSFLGMEACG 48


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 574 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 395
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 394 WI 389
           WI
Sbjct: 397 WI 398


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 521 RIVRWYHHVPWNRRPYAK 468
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 521 RIVRWYHHVPWNRRPYAK 468
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,470
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)