Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1574
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 360 e-100
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 207 9e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 190 2e-49
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 145 5e-36
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 107 1e-24
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 105 5e-24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 100 4e-22
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 55 8e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.001
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.080
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.080
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.32
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.99
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.3
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.0
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 9.2
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 9.2
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 360 bits (885), Expect = e-100
Identities = 164/179 (91%), Positives = 172/179 (96%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 256 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 435
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 436 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRSGL 612
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+R L
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 207 bits (506), Expect = 9e-55
Identities = 92/175 (52%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 273
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 274 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 450
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 451 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRSGLG 615
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + +G
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 190 bits (462), Expect = 2e-49
Identities = 88/176 (50%), Positives = 125/176 (71%), Gaps = 2/176 (1%)
Frame = +1
Query: 82 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 255
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 256 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 435
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 436 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 603
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + R
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 145 bits (351), Expect = 5e-36
Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 32/200 (16%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 222
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 223 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 381
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 382 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 537
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 538 GDGVSHTVPIYEGYALPHAI 597
GDGV+H +P+ EGY + +I
Sbjct: 187 GDGVTHIIPVAEGYVIGSSI 206
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 107 bits (257), Expect = 1e-24
Identities = 60/169 (35%), Positives = 91/169 (53%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 258
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 259 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 438
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 439 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 585
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 105 bits (252), Expect = 5e-24
Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 273
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 274 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 450
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 451 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 576
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 99.5 bits (237), Expect = 4e-22
Identities = 51/180 (28%), Positives = 96/180 (53%), Gaps = 2/180 (1%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 258
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 259 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 432
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 433 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRSGL 612
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I + L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 55.2 bits (127), Expect = 8e-09
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Frame = +1
Query: 280 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 447
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 448 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRSGLG 615
P +A + ++ LYA G G+V+D G + PI +G + A + LG
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLG 227
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.3 bits (85), Expect = 0.001
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 18/192 (9%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 273
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 274 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 441
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 442 FETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPIYEGY 579
FE F A A L + G T +V+DSG +H +P+ +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFS 177
Query: 580 ALPHAILRSGLG 615
A+ R +G
Sbjct: 178 VQEQAVKRVDVG 189
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.080
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 340 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 483
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.080
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 464 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 598
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 461 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 598
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 461 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 598
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 461 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 598
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 139 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 282
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.32
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 236 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 75
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 29.5 bits (63), Expect = 0.43
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 440 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 598
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 0.99
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 440 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 598
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 452 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 598
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.99
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 485 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 589
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 485 PCSRCTRPVVPPVSCWTPATVSPTPCPST 571
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 461 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 568
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 239 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 123
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 247 VPHLLHKSPSVPYRPSRPDGGAFPRSRET 161
+ L+ K+PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 382 LLTEAPLNPKANREKMTQIMFETFN 456
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 276 FEGQDTSFALCLISYIRVLLSHTDHHA 196
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 467 CTSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTRDTHSPTPSCVLDLARS 622
C +PS+ C + PV S T ++++PTP ++ T +PT + A+S
Sbjct: 825 CYNPSQ--YGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQS 875
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = -2
Query: 638 VVCEVTTGPSPERRMAWGSAYPS*MGTVWETPSPESSTIPVVRPDAYSESTAWMATYMAG 459
+ +TTG P P+ GT++ TP P +++ P AY +S + M TY +
Sbjct: 414 ISANMTTGEMPSMTNVPAGNAPAAPGTMYTTPLPTANS-----PIAY-QSYSVMPTYWSF 467
Query: 458 VLNVSNMIWVIFSLLALGLRGASVS 384
N + + ++ + G+ ++
Sbjct: 468 PQNYDSTVPAVYPYMPPPFSGSDMN 492
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 396 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 545
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 621 DRAKSRTQDGVGECVSLVDGHGVGDT 544
D+ + DG E + +V HG+GDT
Sbjct: 12 DKVRLAINDGASEQLPVVIWHGLGDT 37
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 482 KPCSRCTRPVVPPVSCWTPATVSPTPCP 565
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 443 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 589
S+H + +PS + P+ P ++ W P T PT P + + + P
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 199 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 285
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,549
Number of Sequences: 5004
Number of extensions: 65502
Number of successful extensions: 253
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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