Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1573
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.68 
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   8.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.3  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 559 VTNITLKLYIMQNLFAHKNDVIVFLYLLKVIGQYTE 452
           V+N+TLK   M+N+FA  N    F + + ++G YT+
Sbjct: 569 VSNLTLKQLQMENIFASLNLENSFDFGMPLMGPYTQ 604


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 335 INHTIFLRIQKNIIIILNNRLVPNATLR 418
           I++  F   + N+I+ +NNRLV +  LR
Sbjct: 257 ISNADFQDKKSNLILFINNRLVESVELR 284


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 258 FMIKKILFE*SYSNVALNNGLLLFS*E*KIPCQ 160
           +++ + L E SY N+  N+   +F    K+PCQ
Sbjct: 308 YVLYESLLEQSYDNIFFNSFDCIFFSSTKVPCQ 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,993
Number of Sequences: 5004
Number of extensions: 44032
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)