Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1573
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404...    29   2.8  

>05_03_0209 +
           10139857-10140041,10140223-10140294,10140374-10140445,
           10141095-10141166,10141427-10141498,10141628-10141663,
           10141958-10142029,10142107-10142181,10142449-10142514,
           10142610-10142675,10142748-10142792,10142882-10142946,
           10143066-10143445,10143530-10143728,10143801-10143959,
           10144042-10144160,10144294-10144504,10145336-10145567,
           10145650-10145800,10145899-10146162
          Length = 870

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 489 NTMTSFLCANKFCIMYSFRVMFVTIYSIMWTFK 587
           NT  S +  NK C M +F  + V  Y + W F+
Sbjct: 33  NTHMSAILCNKICYMLAFADISVAGYLVTWNFR 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,929
Number of Sequences: 37544
Number of extensions: 202721
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)