Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1573
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 29 1.9
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 29 1.9
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 29 1.9
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 29 1.9
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 29 1.9
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 29 1.9
Z70682-5|CAA94586.1| 345|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 29 3.3
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81518-3|CAB04215.3| 315|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81518-2|CAE11300.1| 340|Caenorhabditis elegans Hypothetical pr... 28 5.8
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 556 TNITLKLYIMQNLFAHKNDVIVFLY 482
TN+T++LY Q H+ND I+ LY
Sbjct: 50 TNVTVQLYFKQIQKVHENDQIITLY 74
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 556 TNITLKLYIMQNLFAHKNDVIVFLY 482
TN+T++LY Q H+ND I+ LY
Sbjct: 50 TNVTVQLYFKQIQKVHENDQIITLY 74
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 489 NTMTSFLCANKFCIMYSFRVMFVTIYSIMWTF 584
N + +F+C FC++ ++ MF I SI W F
Sbjct: 115 NVVIAFMCIAYFCVIVAW-AMFYMISSIAWVF 145
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 489 NTMTSFLCANKFCIMYSFRVMFVTIYSIMWTF 584
N + +F+C FC++ ++ MF I SI W F
Sbjct: 115 NVVIAFMCIAYFCVIVAW-AMFYMISSIAWVF 145
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 556 TNITLKLYIMQNLFAHKNDVIVFLY 482
TN+T++LY Q H+ND I+ LY
Sbjct: 34 TNVTVQLYFKQIQKVHENDQIITLY 58
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 489 NTMTSFLCANKFCIMYSFRVMFVTIYSIMWTF 584
N + +F+C FC++ ++ MF I SI W F
Sbjct: 115 NVVIAFMCIAYFCVIVAW-AMFYMISSIAWVF 145
>Z70682-5|CAA94586.1| 345|Caenorhabditis elegans Hypothetical
protein F08G5.6 protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 471 TFKRYKNTMTSFLCANKFCIMYSFRVMFVTIYSI 572
TF + NT+TSFL + K M+S M V YS+
Sbjct: 99 TFYVFPNTLTSFLVSTKSVNMHSSFRMVVDYYSL 132
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 91 SNNYFLKSTYKYEKQQTYKIPVMLTWNLLFLTK 189
++NY STY ++ YK+ V W L L K
Sbjct: 98 TSNYLTTSTYSDNRRSLYKVDVEKYWEQLLLRK 130
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 221 QTLP*TMVSCYLVKNKRFHVSITGILYVC 135
+TLP + YL+ NK FH++ T ++ C
Sbjct: 293 KTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 221 QTLP*TMVSCYLVKNKRFHVSITGILYVC 135
+TLP + YL+ NK FH++ T ++ C
Sbjct: 293 KTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321
>Z81518-3|CAB04215.3| 315|Caenorhabditis elegans Hypothetical
protein F28D9.2b protein.
Length = 315
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 465 PMTFKRYKNTMTSFL--CANKF-CIMYSFRVMFVTIYSIMWTFKK 590
P T+ +KN M + + C C++ F ++F+ +Y +W +++
Sbjct: 208 PQTYAGHKNAMINLVMQCVVPIVCVITPFNLIFLVVYYDLWQYQQ 252
>Z81518-2|CAE11300.1| 340|Caenorhabditis elegans Hypothetical
protein F28D9.2a protein.
Length = 340
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 465 PMTFKRYKNTMTSFL--CANKF-CIMYSFRVMFVTIYSIMWTFKK 590
P T+ +KN M + + C C++ F ++F+ +Y +W +++
Sbjct: 233 PQTYAGHKNAMINLVMQCVVPIVCVITPFNLIFLVVYYDLWQYQQ 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,597
Number of Sequences: 27780
Number of extensions: 232528
Number of successful extensions: 423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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