Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1571
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 36 0.036
09_06_0081 + 20745627-20748144,20748211-20748308 30 1.8
12_01_0030 + 262452-263210,263332-263575,263867-264165 29 2.4
07_03_0179 + 14801037-14801108,14801325-14802788 29 3.2
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134... 29 3.2
05_03_0090 - 8330283-8330831 29 3.2
09_06_0239 - 21794691-21795986 29 4.2
01_06_0740 + 31603996-31604820,31605080-31605391 28 5.5
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 28 7.3
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 7.3
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 27 9.7
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 27 9.7
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 27 9.7
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589... 27 9.7
05_01_0242 + 1804183-1806096 27 9.7
02_05_0231 + 27037091-27039466 27 9.7
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 27 9.7
01_01_0088 + 688792-691441,691629-693013 27 9.7
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +1
Query: 394 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI 540
GP T +APT PTP PLP RH C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.9 bits (64), Expect = 1.8
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = +3
Query: 252 SAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYI------- 410
S+ +P T G TPLL PL+ P A + H + W VS
Sbjct: 38 SSTAPAAPTITRGPTPLLLLVVPSVPAPLVPAPPAPAPHLVVPHG-GWTVSPTTDNDRFG 96
Query: 411 ---APSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASL 524
A SS P T IA A TTP+V +P+ + +++
Sbjct: 97 DGGASSSTAAPLTPIAH---SAPPETTPYVPALPVPTPSTV 134
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 560 CRPLLDQMSCDGK*CSRCD--RHGLHEGCRVGSGS 462
C P+ + +C G+ CS CD R LH C GS S
Sbjct: 324 CSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHS 358
>07_03_0179 + 14801037-14801108,14801325-14802788
Length = 511
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 195 IKKRSAPLAHAAYIAPVAYSAISPV 269
IKK L HA I PV YS +SPV
Sbjct: 487 IKKEVLKLLHAGIIFPVPYSWVSPV 511
>05_07_0344 +
29411767-29411961,29412692-29412741,29413295-29413430,
29413931-29414032,29414153-29414380,29414460-29414544,
29414648-29414730,29414854-29414945,29415048-29415141
Length = 354
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +3
Query: 291 KTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPV---SYIAPSSYITPNTYIASGPL 461
++PL A Y T L+ + + H P W + Y P P+ YI P
Sbjct: 148 ESPLCAMNPY-GRTKLVIEDMCRDLH---ASDPNWKIILLRYFNPVG-AHPSGYIGEDPC 202
Query: 462 GATTYTTPFVQTVPIASTASLPV 530
G PFVQ V + +L V
Sbjct: 203 GIPNNLMPFVQQVAVGRRPALTV 225
>05_03_0090 - 8330283-8330831
Length = 182
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 427 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHH 522
SLPTP L PLP RH P+ CR L H
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSH 119
>09_06_0239 - 21794691-21795986
Length = 431
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 252 SAISPVVATTYHGKTPLLAS---TSYVSSTPLISQPIAYSAHFIK 377
S+ +P + + G +P LA+ T+ +STP+++ P+ S +F+K
Sbjct: 221 SSGAPGSSAVFLGGSPELATNATTTPAASTPMVADPVLKSGYFVK 265
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -3
Query: 545 DQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHGP 393
D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 182 DAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +3
Query: 309 STSYVSSTPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 461
STS+ P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 462 GATTYTTPFVQTVPIASTASL 524
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 384 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 491
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 366 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 485
+F+ + SPQ P AP + Y + P G T+Y +P
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP 494
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 188 SFHQEAVCSLSACCVYRSCSILCYFSRR 271
SF+ E +CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 388 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPS 489
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>06_03_1227 +
28557855-28558323,28558426-28558586,28558850-28558929,
28559015-28559150,28559239-28559388,28559717-28559899
Length = 392
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 137 QRRASLTLGLLYTVWLHSFHQEAVCSLSACCVYRSCSILCYFSRRSN 277
+RR L L TV H+ H VC+L CCV R ++ +FS R +
Sbjct: 106 ERRERDFLAELGTVG-HARHPN-VCALLGCCVDRDLYLVFHFSGRGS 150
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 448 QVALLEPLPTRHPSCRPCRSHR 513
++ LL PLP RH S P SHR
Sbjct: 7 RLRLLLPLPRRHLSTAPATSHR 28
>02_05_0231 + 27037091-27039466
Length = 791
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 264 PVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNT 440
PV + PL A +S T + + ++ A IKK P+W + I + T +T
Sbjct: 534 PVTSGLATPPNPLAAKFDIMSGTSMAAPHLSGIAALIKKAHPKWSPAAIKSAMMTTADT 592
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 455 PSW--SHYLH-DTLRADRADRIDCIT 523
PSW S+ +H DTL D +R+DCI+
Sbjct: 1311 PSWLGSNIIHLDTLHLDGLERLDCIS 1336
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 455 PSW--SHYLH-DTLRADRADRIDCIT 523
PSW S+ +H DTL D +R+DCI+
Sbjct: 867 PSWLGSNIIHLDTLHLDGLERLDCIS 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,296
Number of Sequences: 37544
Number of extensions: 352438
Number of successful extensions: 1190
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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