Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1570
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 186 7e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 85 3e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 59 2e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 50 8e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 45 4e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.051
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.12
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.36
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 0.36
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 0.63
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 1.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 3.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.4
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 5.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 24 5.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 24 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 186 bits (454), Expect = 7e-49
Identities = 81/88 (92%), Positives = 85/88 (96%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 262 RGILTLKYPIEHGIVTNWDDMEKFWHHT 345
RGILTLKYPIEHGIV NWDDMEK WHHT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHT 89
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (252), Expect = 2e-24
Identities = 44/81 (54%), Positives = 59/81 (72%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 280 KYPIEHGIVTNWDDMEKFWHH 342
+ PIE GI+ NW DME+ W +
Sbjct: 72 QRPIERGIIQNWSDMEEIWSY 92
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 85.0 bits (201), Expect = 3e-18
Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 261
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 262 RGILTLKYPIEHGIVTNWDDMEKFWHHT 345
R +L +KYP+E+GI+ ++++M + W +T
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYT 89
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.8 bits (136), Expect = 2e-10
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 24/106 (22%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 228
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 229 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKFWHHT 345
D ++G++A K +L YPI HG + NWD ME+FW +
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQS 112
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 50.4 bits (115), Expect = 8e-08
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 280 -KYPIEHGIVTNWDDMEKFWHHT 345
+ P E +++NWD ME+ +T
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYT 105
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.4 bits (105), Expect = 1e-06
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 264
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 265 GILTLKYPIEHGIVTNWDDMEKFWHH 342
G + +K I +G V NWD W +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRY 86
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.8 bits (101), Expect = 4e-06
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 264
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 265 GI--LTLKYPIEHGIVTNWDDMEKFW 336
I + +K +GI+ +W+ W
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTW 87
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.051
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 288
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.12
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 242 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 81
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.36
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 28.3 bits (60), Expect = 0.36
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = -3
Query: 282 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGSIVYY 103
F G +F CLI++IR +SH D EHG II C T L G+I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 0.63
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 286 PIEHGIVTNWDDMEKFWHH 342
PI+ G V +W+ ++ FW H
Sbjct: 113 PIQRGRVVDWEALKAFWKH 131
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 245 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 129
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 1.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 282 FEGQDTSFALCLISYIRVLLSHTDHHA 202
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 3.4
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 280 KYPIEH--GIVTNWDDMEKFW 336
++ H G + +W W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 205 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 291
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 4.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 112 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 264
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 243 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGS 115
+Y +LL D + + G +DR + + + + C L H+G+
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSGT 268
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 144 CETGLAHTGSIVYYQRGNFFVAHLELVFN 58
C HT ++V++Q NF + ELV N
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNN 257
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 154 HHLLRNRPCTYRIHCLLPTRQL 89
HHLL N R+H LL QL
Sbjct: 348 HHLLENLSKESRLHILLQLSQL 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,572
Number of Sequences: 5004
Number of extensions: 30973
Number of successful extensions: 86
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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