Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1569
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    29   0.50 
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.0  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    27   3.5  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -3

Query: 287 IIKFVISSDRLHDVIAKITHNIIYFILICMNLFYRVSELWTYEIFIFNL-PKIEN*IKLT 111
           I +FV +S+   +   K   N+  FI I  + FY + ++W   + +F+L P+I   I LT
Sbjct: 369 ISEFVAASNVSEEKGPKSFANLA-FITIFSHFFYHIDDMWRSTLGLFSLIPQIIGIIYLT 427

Query: 110 VXXXXXXKGSAAAEFLQPGG 51
           V       G     F+Q GG
Sbjct: 428 V----MFTGRELDTFMQFGG 443


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -3

Query: 326 FFEDSCFHIGSEVIIKFVISSDRLHDVIAKITH----NIIYFILICMNLFYRVSELWTYE 159
           F+    + +  +++I FV+   +L   +A + +     II    IC +   R+   WTY 
Sbjct: 107 FWRYFAYLLSLQIVIDFVLY--KLSSAMASLHYLKFVKIIALSYICFSSLIRICHCWTYF 164

Query: 158 IFIFNLPKIEN*IKL 114
           I I  L  +   + L
Sbjct: 165 IRIMGLSSLNKFVNL 179


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +1

Query: 250 SCNLSELITNLIMTSEPMWKQESSKKLTSNSPTRRHIRTLKQNDTIITLLFELSIIYFNV 429
           +CNL     +L   +   +K  +S K ++ S     I  +   DT++  +FE+  ++ + 
Sbjct: 258 ACNLITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVVSSQDTLLPTIFEIDALFSST 317

Query: 430 HIDLRENL 453
              LR+N+
Sbjct: 318 --PLRQNM 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,363
Number of Sequences: 5004
Number of extensions: 43105
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)