Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1569
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    29   4.8  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    29   4.8  
02_04_0106 + 19802171-19802323,19802486-19802653                       28   6.4  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    28   8.4  

>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
            19239855-19240103,19240248-19240337,19240453-19240632,
            19240713-19240942,19241558-19241735,19242327-19242432,
            19242786-19242883,19243683-19243813,19243908-19244087,
            19244179-19244443,19244557-19244627,19244707-19244922,
            19245147-19245294
          Length = 1317

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 417  LFQRAYRPARKSKRAVKHVTSSLRIKLLFYVLPAGYVKSNI 539
            +FQ+A    RK   A     +SL +  +FYV+  GY K  +
Sbjct: 883  IFQKAEEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV 923


>04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,
            7469505-7469622,7470035-7470067,7470400-7470474,
            7470887-7471043,7471142-7471230,7472041-7472294,
            7472977-7473148,7473250-7473333,7473626-7473730,
            7474055-7474363,7474622-7474756,7476236-7476317,
            7476423-7476502,7476622-7476783,7477071-7477138,
            7478422-7478502,7478634-7478760,7478816-7478879,
            7480808-7480854,7481042-7481335
          Length = 1149

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +3

Query: 147  KNKDFISPQFTYTIEKIHTDQDEINN 224
            + K+ +S ++ +TI+KIH DQ+ +++
Sbjct: 1109 ETKELLSGRWNFTIQKIHRDQNRVSH 1134


>02_04_0106 + 19802171-19802323,19802486-19802653
          Length = 106

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +1

Query: 268 LITNLIMTSEPMWKQESSKKLTSNSPTRRHIRTLKQ--NDTIITLLFELSIIYFNVHI-D 438
           L+  LI+TS+  WKQ+   +L S S  ++HI +  +   + II L  E  I   N HI +
Sbjct: 11  LLFVLIVTSQLEWKQQLVNELESTSHKQKHISSRGELVKEKII-LSQEKMIRLLNEHIQN 69

Query: 439 LRENL 453
           L++ L
Sbjct: 70  LQQQL 74


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 ITNLIMTSEPMWKQESSKKLTSNSPTRRHIR 363
           I N+ M    +WK E+S K+  NS  R+H +
Sbjct: 202 IENMKMYDFEIWKPENSAKVPKNSILRKHTK 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,065
Number of Sequences: 37544
Number of extensions: 265790
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)