Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1566
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   1.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   1.6  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   3.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.8  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    25   6.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.4  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    25   6.4  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   8.5  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.5  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   8.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 196 WFLQSPPSLKPRTLLLSSWMLLTVSPSTL 282
           + L++PPS++PR +  + W++    P+ L
Sbjct: 284 FILEAPPSMQPRLIQFTRWVVDKADPNFL 312


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 190 PVWFLQSPPSLKPRTLLLSSWMLLTVSPSTLLRSSLPAPLTSRQKLCLATTTSAS 354
           PVW   S P   P T   SS    T  P+T   SS   P +S +   +A++ SAS
Sbjct: 124 PVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTE---VASSYSAS 175


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 536 KYIKSFLPWVDAKG 495
           KY+K FLP+VDA G
Sbjct: 177 KYLKEFLPYVDAIG 190


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 190  PVWFLQSPPSLKPRTLLLSSWMLLTVSPSTLLRSSLPAPLTS 315
            P W   +  S   ++ L+ S   L+ +PS+L RSS+ +  +S
Sbjct: 954  PDWISNTKQSFDKKSSLIDSIPALSPAPSSLARSSVSSQRSS 995


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 114 SQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVA--ALSQAPHSPAVVL-DAVNGVPLDTP 284
           S  ++ ++ G+ + +P V   A     + P++A   +    +     L D +NG+P DTP
Sbjct: 383 SNRASMILSGTSMASPHVAGLAAYFISLDPSLANHPVELKKYMLKFALKDLLNGIPEDTP 442

Query: 285 EVVA 296
            V+A
Sbjct: 443 NVLA 446


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 93  VPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVV 248
           +P  SSLS YS+SV+  S  +  +  +++LI      A ++ S  P S ++V
Sbjct: 657 IPISSSLSTYSSSVIPSSSTLVSS--SSSLIVSSSPVASSSSSPIPSSSSLV 706


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 366 RQQTACGGGGSQTELLPGSERRGQRRPQE 280
           +Q  A  GG  +TE +P + RRG ++ Q+
Sbjct: 175 QQHIAQLGGKKETEKMPMAARRGMKKKQK 203


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 237 PAVV--LDAVNGVPLDTPEVVAARAAHFQAKAL 329
           PA++  L+ ++G PL+TP +   +  H + +A+
Sbjct: 325 PALIEGLNILDGYPLNTPSLAFPKRLHLEVEAM 357


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 84  SAIVPGVSSL--SQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDA 257
           + I PG +++  +  STS V  + +   +V + ++I   +   + + SQ        +  
Sbjct: 66  NGITPGTTTIYPTSISTSGVSSNNIDETSVSSESIITSTITTTITSGSQLY---TTTITG 122

Query: 258 VNGVPLDTPEVVAARAAHFQAKALSG 335
            N  P+DT EVV   A  F     SG
Sbjct: 123 QN-TPVDTVEVVIPTAGTFTTTLTSG 147


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 213 ALSQAPHSPAVVLDAVNGVPLDTPEVVAARAAHFQAKALSGYH 341
           A+S   HSP+  L +   +P  TP     +  +F +  +S  H
Sbjct: 171 AMSPPSHSPSPFLQSSQHIPPSTPAQKLRKKNNFDSFRISNSH 213


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 486 YPKALSVHPW*KALNIFK 539
           YP AL +H W ++ NI K
Sbjct: 208 YPTALQIHNWLRSTNITK 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,921
Number of Sequences: 5004
Number of extensions: 34621
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)