Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1566
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    27   0.11 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    27   0.11 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 323 FCLEVSGAGSDDLRSVEGDTVNSIQDDSRRVRGLREGGDCRNHTGSDECSVVHS 162
           +CL  + +  DD  +V+ D +  +  D  + R     G C   +GSD C+ +++
Sbjct: 75  YCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIYN 128


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 323 FCLEVSGAGSDDLRSVEGDTVNSIQDDSRRVRGLREGGDCRNHTGSDECSVVHS 162
           +CL  + +  DD  +V+ D +  +  D  + R     G C   +GSD C+ +++
Sbjct: 75  YCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIYN 128


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +2

Query: 140 WIASGSSCCVQRC-THRSRCGSC 205
           W++   S C  RC   R + GSC
Sbjct: 73  WLSINHSACAIRCLAQRRKGGSC 95


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -3

Query: 296 SDDLRSVEGDTVNSIQDDSRRVRGLREGGDCRNHTGSDECSVVHSRSYQRR 144
           S+ LRS       +    SR      E G+   + G   CS   SR Y+++
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKK 264


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 228  GLERGRRLQEPHRER*VQRCTQQELPEAI 142
            G+ R +R     R +  Q  +QQ++PE++
Sbjct: 1295 GIPRDQRAMTEARNQQQQASSQQQIPESM 1323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,440
Number of Sequences: 438
Number of extensions: 3185
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)