Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1564
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.22 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.2  
AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochr...    23   2.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 435  PQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 325
            P T  SS+ T P   TTT R    T   T  T TT+P
Sbjct: 1039 PSTWWSSTTTSPWWTTTTTRRTTTTRPTTTST-TTRP 1074


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 438 LPQTADSSSATRPSMMTTTNRSP--AATLTRTPMTQTTKPKA 319
           LP T +    T P+ +TTT +    A T   TP     K K+
Sbjct: 294 LPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKS 335


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 438 LPQTADSSSATRPSMMTTTNRSP--AATLTRTPMTQTTKPKA 319
           LP T +    T P+ +TTT +    A T   TP     K K+
Sbjct: 294 LPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKS 335


>AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 63

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 108 LAFFGL*SPPSVDATDAAESKFLCIPFPPVLYLEPTV 218
           +A FG    P V  +D  E K+L +     L L P V
Sbjct: 27  VALFGKEKKPIVSYSDLQEMKYLELVIKEALRLYPLV 63


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 447 GSGLPQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASL 310
           G  +P     S    P    T   SP+ T T T  T + KP ++ L
Sbjct: 404 GVNVPVPPMQSQIINPQPQIT---SPSNTNTSTSSTNSNKPNSSDL 446


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = -2

Query: 577 WIQDDPENIVDLADVSASRKITATNPRSEQRTTELKSQRSKDGGFRTAP 431
           W+ +      D A+  A+++I   NP  +      +  R+ D   R  P
Sbjct: 281 WVLEKICTTTDAAEFLAAQEIPGQNPGEKTNIAPRERPRATDHQRRNEP 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,787
Number of Sequences: 336
Number of extensions: 1772
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)