Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1564
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 31 0.100
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.93
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.2
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 1.6
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 2.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.7
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.7
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.0
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 26 5.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 5.0
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 6.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.5
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 6.5
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 31.5 bits (68), Expect = 0.100
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 447 GSGLPQTADSS-SATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF 301
GS + T S+ ++T+PS +T+T R AT T+T P A+S+ ++
Sbjct: 232 GSTITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAY 281
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.93
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -3
Query: 459 VRTAGSGLPQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRS 304
V G+G+ QT SSS+ + ++++ SP+++ T T TT P ++S S
Sbjct: 115 VYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSST----TTTTSPSSSSSSS 162
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 450 AGSGLPQTADSSSATRPSMM-TTTNRSPAATLTRTPMTQTTKPKAASLRS 304
+ S + T SSS++ PS TTT SP+++ + + + ++ ++S S
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 177
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -3
Query: 477 SLSRSGVRTAGSGLPQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRS 304
S S S ++ S ++ SSS++ S ++++ S +++ + P+T +T +S S
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSS 223
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 435 PQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAAS 313
P T+ S++ T P+ TN+ T P TQTT+ A++
Sbjct: 233 PTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASN 273
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 88 PSS*YRPWLSSVCNHLPA*TLQTPQNLN 171
PS RP LSSV +LP + TP NLN
Sbjct: 275 PSPYSRPLLSSVHPNLPPGSQSTPANLN 302
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 598 KKARSQAWIQDDPENIVDLADVSASRKITATNP 500
+++ +A++ ++PE IVDLAD + NP
Sbjct: 510 RESAVKAFLMNNPEGIVDLADKMTDMRGLCVNP 542
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 432 QTADSSSATRPSMMTTTNRSPAA----TLTRTPMTQTTKPKAAS 313
+ +DSSS+T ++TT+ SPA TLT +T T +S
Sbjct: 189 EPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSS 232
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 420 SSSATRPSMMTTTNRSPAATLTRTPMT 340
SS+ +RP + T+ RS A T P+T
Sbjct: 1084 SSAVSRPPIATSAGRSSTAASTSAPLT 1110
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = -3
Query: 477 SLSRSGVRTAGSGLPQTADSSSATRPSMMTTTNRSPAA-------TLTRTPMTQTTKPKA 319
SL S ++ S P T SSS++ S +++++S ++ + +RT +TT K+
Sbjct: 127 SLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKS 186
Query: 318 ASLR 307
+S R
Sbjct: 187 SSYR 190
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 450 AGSGLPQTADS--SSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAAS 313
AGSG T S S+ T+P+ + T + + T TTKP A+
Sbjct: 558 AGSGSATTIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTTKPAPAA 605
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 608 PKAKEGAQPGVDPGRPGEHRRS 543
P EGAQ +D RPG+++ S
Sbjct: 186 PSLLEGAQASIDKNRPGKNQPS 207
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 67 YLPLSRTNLNKRKKSVNSKQ 8
+L L+R+ L+K +S+NSKQ
Sbjct: 715 FLELTRSQLSKMNESINSKQ 734
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 532 SASRKITATNPRSEQRTTELKSQRSKDGGFRTA 434
S KIT T+P T LK++ SK G + A
Sbjct: 158 SKDEKITNTDPIPSPIITNLKTESSKSSGAKKA 190
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = -3
Query: 477 SLSRSGVRTAGSGLPQTADSSSATRPSMMTTTNRSPAAT 361
+L+ S + T S +P T+ SSS+T S+ ++++ S A++
Sbjct: 229 TLTSSSLST--SSIPSTSSSSSSTSSSLSSSSSSSTASS 265
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -3
Query: 540 PTCQPAGKSLLR-IQEANRERLSLSRSGVRTAGSGLPQTADSSSATRPSMMTTTNRS--P 370
PT P+ S+ + + R + S S +++ QT+D P+ +TTT+ S P
Sbjct: 134 PTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTSIDP 193
Query: 369 AATLTRTPMTQTTKPKA 319
+ + TT+ A
Sbjct: 194 SVAFSSKSTLATTRTNA 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,600
Number of Sequences: 5004
Number of extensions: 28597
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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