Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1564
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0443 - 17808897-17809110,17809169-17813652                       29   3.8  
07_01_0608 + 4515709-4515951,4516085-4516678                           29   3.8  
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    28   5.0  
06_03_0337 + 19678152-19678484,19678616-19678801,19679232-196794...    28   6.7  
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175     27   8.8  
08_02_0588 + 19036509-19039235                                         27   8.8  

>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 556 NIVDLADVSASRKITATNPRSEQRTTELKSQRSKDGGF--RTAPDGRL 419
           NIV  A  S   ++  TNP  +++ T L +     G F  ++ PDGRL
Sbjct: 576 NIVVPAKGSKWVRLMGTNPWKDEKYTVLAADYMSSGSFARKSTPDGRL 623


>07_01_0608 + 4515709-4515951,4516085-4516678
          Length = 278

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -3

Query: 492 NRERLSLSRSGVRTAGSGLPQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 325
           N  +LS +R     A    P+ A    AT+P + TT    PAA       T+  KP
Sbjct: 139 NSFKLSSTRPAAPAAADAKPKAAP---ATKPKVKTTKAAKPAAKAKAPATTKAAKP 191


>02_05_0969 + 33165396-33165935,33166352-33166883,33166988-33167242,
            33167515-33167606,33167745-33167942,33168049-33168240,
            33168341-33168562,33168858-33169024,33169117-33169210,
            33169308-33169364,33169459-33169587,33169681-33169752,
            33170180-33170293,33170419-33170580,33170666-33170794,
            33171057-33171158,33171266-33171342,33171470-33171592,
            33171666-33172227
          Length = 1272

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 187  KGIHRNLDSAASVASTLGGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKR 32
            + + R   +++  A T G DY             K DPYAY PL R  LN+R
Sbjct: 1176 QSVKRRKTTSSGWAYT-GHDYTSKKASGDLKKKDKMDPYAYWPLDRKLLNRR 1226


>06_03_0337 +
           19678152-19678484,19678616-19678801,19679232-19679417,
           19680840-19680926,19681045-19681086,19681164-19681253,
           19681399-19681503,19681797-19681835,19681914-19682018,
           19682463-19682531,19682587-19682736,19683156-19683335
          Length = 523

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 607 RKRKKARSQAWIQDDPENIVDLADVSASRKITATNPRSEQRTTELKSQRSK 455
           RKR  A +    + +PE + + A  ++  +  AT  R E    ++K ++SK
Sbjct: 18  RKRPAAAAATPPESEPEPVHNTAACNSEGENNATGKRREHNNKKMKEEKSK 68


>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
          Length = 294

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 PPSVDATDAAESKFLCIPFPPVLYLEP 212
           PP  DAT   E    C PF P+ ++EP
Sbjct: 209 PPPSDAT-GGEVSIPCFPFSPLPFIEP 234


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 305 LRRLAALGFVVCVIGVRVNVAAGLRFVVVIIEG 403
           +R +  LGFV C+  V VN+   +  VVVI+ G
Sbjct: 159 VRHVLCLGFVECLGCVTVNLVLFVCSVVVIVSG 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,297,388
Number of Sequences: 37544
Number of extensions: 233487
Number of successful extensions: 1041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)