Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1564
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.3  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 554 HRRSGRRVSQQENHCYESKKRTEND 480
           H    + ++Q+ N C   KKR END
Sbjct: 119 HELKEKHLTQRINSCDLLKKRNEND 143


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 295 PGTKRRYDDILS 260
           P TKR YDD+LS
Sbjct: 32  PDTKRLYDDLLS 43


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/50 (20%), Positives = 22/50 (44%)
 Frame = -2

Query: 592 ARSQAWIQDDPENIVDLADVSASRKITATNPRSEQRTTELKSQRSKDGGF 443
           ARS  W+ +    +   +     + +   NP+ +Q   E + Q+  + G+
Sbjct: 83  ARSDDWLANANSPVGSPSAALQPQHVVYGNPQQQQLAAETQQQQQHNNGY 132


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 125  QTEESQGRYQEEGQARSLRLPTPVQDKSQ*KEKICQQQ 12
            Q ++ Q + Q++ Q    + P P Q + Q +++  QQQ
Sbjct: 1509 QQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 489 RER-LSLSRSGVRTAGSGLPQTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 325
           RER  SLS +       G P T  ++  T  +  TTT  +     T    + TT P
Sbjct: 635 RERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPP 690


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 319 GKPSKLLKPGTKRRYDDIL 263
           GKPS++ K G  RR+ ++L
Sbjct: 542 GKPSRISKQGLFRRFYNLL 560


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 539 RRVSQQENHCYESKKRTEND 480
           + ++Q+ N C   KKR+END
Sbjct: 3   KHLTQRINSCDLLKKRSEND 22


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 420 SSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF*SPERN 283
           SS  +     +    +    L + P+TQ+ K  A +L +   P RN
Sbjct: 311 SSDLSESETSSDEEEADTRPLKKEPITQSNKRTAGNLATREHPSRN 356


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 539 RRVSQQENHCYESKKRTEND 480
           + ++Q+ N C   KKR END
Sbjct: 3   KHLTQRINSCDLLKKRNEND 22


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 580 AWIQDDPENIVDLADV 533
           +W+ D+   +VD +DV
Sbjct: 938 SWVSDNAHKVVDASDV 953


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 608 PKAKEGAQPGVDPGRPGEHRRSGRRVS 528
           P   +G  PG  PG P     S   +S
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMIS 66


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/54 (24%), Positives = 20/54 (37%)
 Frame = -2

Query: 286 KRRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDSAASVASTLGGDY 125
           ++R  D   + SG  +  RA     G + K    GI+ +  S         G Y
Sbjct: 236 EKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSSTVGTIFGYQGTY 289


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 542 QIDDVLRVVLDPRLAAR 592
           Q D+  +V+LDP+L A+
Sbjct: 146 QQDNAEQVILDPKLIAK 162


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 542 QIDDVLRVVLDPRLAAR 592
           Q D+  +V+LDP+L A+
Sbjct: 146 QQDNAEQVILDPKLIAK 162


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 542 QIDDVLRVVLDPRLAAR 592
           Q D+  +V+LDP+L A+
Sbjct: 146 QQDNAEQVILDPKLIAK 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,475
Number of Sequences: 438
Number of extensions: 2127
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)