Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1562
(548 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O00267 Cluster: Transcription elongation factor SPT5; n... 51 2e-05
UniRef50_Q4SB75 Cluster: Chromosome undetermined SCAF14677, whol... 50 4e-05
UniRef50_Q9V460 Cluster: Transcription elongation factor SPT5; n... 44 0.003
UniRef50_Q9STN3 Cluster: Putative transcription elongation facto... 43 0.004
UniRef50_Q21338 Cluster: Transcription elongation factor SPT5; n... 39 0.066
UniRef50_O80770 Cluster: Putative transcription elongation facto... 39 0.066
UniRef50_A0NE83 Cluster: ENSANGP00000031674; n=3; Diptera|Rep: E... 38 0.12
UniRef50_A2GNG6 Cluster: Inositol polyphosphate kinase family pr... 34 1.9
UniRef50_Q6A6N7 Cluster: 50S ribosomal protein L24; n=1; Propion... 34 1.9
UniRef50_A6P4B8 Cluster: Ryanodine receptor 1b; n=25; Eukaryota|... 34 2.5
UniRef50_Q8R5P4 Cluster: CAMP-binding domains-Catabolite gene ac... 33 4.4
UniRef50_A6ND40 Cluster: Uncharacterized protein ENSP00000372640... 33 4.4
UniRef50_A2DMU7 Cluster: Putative uncharacterized protein; n=1; ... 32 7.6
UniRef50_A5E135 Cluster: Putative uncharacterized protein; n=1; ... 32 7.6
>UniRef50_O00267 Cluster: Transcription elongation factor SPT5; n=37;
Eumetazoa|Rep: Transcription elongation factor SPT5 -
Homo sapiens (Human)
Length = 1087
Score = 50.8 bits (116), Expect = 2e-05
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = -1
Query: 533 VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
+ P +VKVI GEDR+A G L+SI+ ++G+V+ D+ +KI+ LR L K+
Sbjct: 1033 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084
>UniRef50_Q4SB75 Cluster: Chromosome undetermined SCAF14677, whole
genome shotgun sequence; n=4; Euteleostomi|Rep:
Chromosome undetermined SCAF14677, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 1131
Score = 50.0 bits (114), Expect = 4e-05
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 533 VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
V P +VKVI GEDR+A G L+SI+ +G+V+ DD +KI+ LR L ++
Sbjct: 1080 VTPTKNNKVKVIMGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGRL 1131
>UniRef50_Q9V460 Cluster: Transcription elongation factor SPT5; n=5;
Eumetazoa|Rep: Transcription elongation factor SPT5 -
Drosophila melanogaster (Fruit fly)
Length = 1078
Score = 43.6 bits (98), Expect = 0.003
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = -1
Query: 533 VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDDIKIMQLRHLCKMAS 375
VLP G+ K+I G+DR++VG+++S + V + ++IK++ + LCKM S
Sbjct: 1025 VLPCNGDEFKIIYGDDRESVGRVLSKDGDVFVCRI-NEEIKLLPINFLCKMKS 1076
>UniRef50_Q9STN3 Cluster: Putative transcription elongation factor
SPT5 homolog 1; n=5; Magnoliophyta|Rep: Putative
transcription elongation factor SPT5 homolog 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1054
Score = 43.2 bits (97), Expect = 0.004
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = -1
Query: 527 PQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTD-DIKIMQLRHLCK 384
P+ +RVK++ G+ R + G+LI I+ +G+VK + D+KI+ L L K
Sbjct: 1002 PRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAK 1050
>UniRef50_Q21338 Cluster: Transcription elongation factor SPT5; n=3;
Bilateria|Rep: Transcription elongation factor SPT5 -
Caenorhabditis elegans
Length = 1208
Score = 39.1 bits (87), Expect = 0.066
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -1
Query: 527 PQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTD--DIKIMQLRHLCKMAS 375
PQ G+ +VI G+D GQL+S++ E V++ D D++++ + CKM S
Sbjct: 1154 PQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIGLCCKMHS 1206
>UniRef50_O80770 Cluster: Putative transcription elongation factor
SPT5 homolog 2; n=1; Arabidopsis thaliana|Rep: Putative
transcription elongation factor SPT5 homolog 2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 990
Score = 39.1 bits (87), Expect = 0.066
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -1
Query: 539 SRVLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTD-DIKIMQLRHLCKM 381
S V P+ ERVK++ G+ + ++I + Q+G+VK DIKI++L L K+
Sbjct: 934 SLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKILKLTILAKL 987
>UniRef50_A0NE83 Cluster: ENSANGP00000031674; n=3; Diptera|Rep:
ENSANGP00000031674 - Anopheles gambiae str. PEST
Length = 980
Score = 38.3 bits (85), Expect = 0.12
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -1
Query: 533 VLPQAGERVKVIAGEDRDAVGQLISIE-NQEGVV 435
VLP+ GE+ KVI GEDR+ VG+ I + + E VV
Sbjct: 924 VLPEPGEKFKVIVGEDRETVGEFIDMSGSNEAVV 957
>UniRef50_A2GNG6 Cluster: Inositol polyphosphate kinase family
protein; n=1; Trichomonas vaginalis G3|Rep: Inositol
polyphosphate kinase family protein - Trichomonas
vaginalis G3
Length = 294
Score = 34.3 bits (75), Expect = 1.9
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 37 CNKQQYLNISIDFFQILNVILMFLLLISFYSTSIHKVSFQFGASVF 174
C+K ++L+ DFF N I +F+ ++ TS+ K+ QFGA ++
Sbjct: 186 CSKSEFLDFLKDFFHYPNQIPIFVEKLNKLKTSMAKMREQFGARMY 231
>UniRef50_Q6A6N7 Cluster: 50S ribosomal protein L24; n=1;
Propionibacterium acnes|Rep: 50S ribosomal protein L24 -
Propionibacterium acnes
Length = 122
Score = 34.3 bits (75), Expect = 1.9
Identities = 16/34 (47%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Frame = -1
Query: 518 GERVKVIAGEDRDAVGQLISIE-NQEGVVKFGTD 420
G+RVKVIAG D+ A+G+++S++ +E VV G +
Sbjct: 9 GDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVN 42
>UniRef50_A6P4B8 Cluster: Ryanodine receptor 1b; n=25; Eukaryota|Rep:
Ryanodine receptor 1b - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 5076
Score = 33.9 bits (74), Expect = 2.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 19 FINYFLCNKQQYLNISIDFFQILNVILMFLLLISFYSTSIHKVSFQFGASVFRK 180
F+ YFL Y+ ++ FF IL+ I+ FL +I + + V F+ + RK
Sbjct: 4665 FVYYFLEESTGYMEPAMAFFSILHTIISFLCIIGYNCLKVPLVIFKREKELARK 4718
>UniRef50_Q8R5P4 Cluster: CAMP-binding domains-Catabolite gene
activator and regulatory subunit of cAMP-dependent
protein kinases; n=1; Thermoanaerobacter
tengcongensis|Rep: CAMP-binding domains-Catabolite gene
activator and regulatory subunit of cAMP-dependent
protein kinases - Thermoanaerobacter tengcongensis
Length = 225
Score = 33.1 bits (72), Expect = 4.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -1
Query: 500 IAGEDRDAVGQLISIENQEGVVKFGTDDIKIMQLRHLCKM 381
+AG R+ + +++S +++G++K G D I I L L KM
Sbjct: 185 LAGTSRENITRILSQMDRDGIIKLGKDKILIKDLEELRKM 224
>UniRef50_A6ND40 Cluster: Uncharacterized protein ENSP00000372640;
n=5; Eutheria|Rep: Uncharacterized protein
ENSP00000372640 - Homo sapiens (Human)
Length = 516
Score = 33.1 bits (72), Expect = 4.4
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 388 QR*RSCMILMSSVPNLTTPSWFSMEISCPTASRSSPAITFTRSP 519
QR R +I P L+ PS FS + CP+AS +P+ T T SP
Sbjct: 36 QRDRRHVIRKVRTPRLS-PSHFSAALQCPSASSRTPSPTATGSP 78
>UniRef50_A2DMU7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 260
Score = 32.3 bits (70), Expect = 7.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 28 YFLCNKQQYLNISIDFFQILNVILMFLLLISFYSTSIHKVSFQFGASVF 174
YF + QY+ ++D+F + NV F LLI Y K + G +++
Sbjct: 156 YFFLTEIQYITTTLDWFLVRNVWFPFKLLIPLYKVICIKSEYPEGYTMY 204
>UniRef50_A5E135 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1544
Score = 32.3 bits (70), Expect = 7.6
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 261 FFYLVISSFEKNTSNLRLPQKMKI--QLTQL*GIYRSIELRGHLAKMT*LHDFDVVGAEF 434
++Y+ S EKNT + LP ++K+ L +L I IEL+ L ++T L + F
Sbjct: 1433 YYYIFNSLLEKNTEEVLLPVQLKVINHLQELNAILSKIELKS-LRELTKLKKLEQSMEIF 1491
Query: 435 DDSLLVFDGDKLSDR 479
DD L + + D+
Sbjct: 1492 DDINLFLEVVRTIDK 1506
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,250,517
Number of Sequences: 1657284
Number of extensions: 6664721
Number of successful extensions: 22016
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22003
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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