Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1562
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   3.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.6  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   9.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.7  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   9.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.7  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    25   9.7  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 518 GERVKVIAGEDRDAVGQLISIENQE 444
           G+ VKVIAG+ +D  G ++ I   E
Sbjct: 524 GDYVKVIAGKYKDDTGMVVRISKDE 548


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 183 LFTKNGRSELKT-HFVNRSRVKRNQEQEHQYHI*NLEKIYRNIQI 52
           L  +N + +L   HF+N+ + + + E+ H Y     +++Y+ ++I
Sbjct: 849 LTPENSKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYLKI 893


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 117 NQEQEHQYHI*NLEKIYRNI 58
           +Q+  H+ HI +LEKI++NI
Sbjct: 235 DQQIVHKEHISHLEKIWKNI 254


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 162 SELKTHFVNRSRVKRNQEQEHQYHI 88
           ++++T+ + RSR+     QE  YHI
Sbjct: 252 AKIQTYLLERSRLVFQPNQERNYHI 276


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 467 LISIENQEGVVKFGTDDIKIMQLRHL 390
           L +  NQ+GV+ F T DI+I    +L
Sbjct: 37  LANATNQQGVMLFSTGDIRIGAYNYL 62


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = -2

Query: 448 KRESSNSAPTTSKSCNYVIFARWP-LNSIDR*IPHNCVN------CIFIFCGRRKLLVFF 290
           ++++S+S+  +S      +F   P     DR + H   N      C  IFCG  +L+ FF
Sbjct: 787 QKDNSDSSSESSADIFQDVFPSMPDFRGGDRGLSHKHQNIPLPKTCAAIFCGNDELVCFF 846

Query: 289 S 287
           +
Sbjct: 847 T 847


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 366 IELRGHLAKMT*LHDFDVVGAEFDDSLLVFDGD 464
           I+ R  +     LHD DV+ +     L +F GD
Sbjct: 226 IQKRKEVVHTVSLHDIDVINSRTQGFLALFSGD 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,702
Number of Sequences: 5004
Number of extensions: 31086
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)