Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1562
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167...    27   9.9  
09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607           27   9.9  
04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974     27   9.9  

>10_07_0081 -
           12716130-12716271,12716367-12716449,12716729-12716785,
           12716886-12716942,12717014-12717113,12717204-12717274,
           12718284-12718460,12719142-12719312,12722151-12722234,
           12722310-12722354,12722447-12722537,12722745-12722863,
           12723213-12723434,12723630-12723854,12725366-12725571,
           12726081-12726258,12726702-12726762,12727930-12728039,
           12728126-12728257,12729136-12729208,12729608-12729645,
           12730373-12730474,12730565-12730622,12731071-12731172,
           12731240-12731386,12732023-12732159,12732256-12732405,
           12733103-12733259,12733615-12733673,12733982-12734138,
           12734209-12734354,12739177-12739320,12739478-12739606
          Length = 1309

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 180 FTKNGR---SELKTHFVNRSRVKRNQEQEHQYH 91
           F K+GR   + ++T+ + RSRV +  E E  YH
Sbjct: 222 FDKSGRISGAAVRTYLLERSRVVQISESERNYH 254


>09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607
          Length = 386

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 290 EKHKQLTSPTEDENTINTIVRYLPVDRIKRPSCKDDV 400
           E   QLT+P +    +N I+R  P D    P  KDD+
Sbjct: 48  EAENQLTTPAQHIRAVNAILRETPYD----PVLKDDL 80


>04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974
          Length = 669

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 441 SLLVFDGDKLSDRVPVLSRDHLHALSRLRQHPAL 542
           S LV +  K ++R+ + +R+    LSR+RQ P +
Sbjct: 626 SALVSEASKSTERMDIATREVSALLSRMRQQPVV 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,485
Number of Sequences: 37544
Number of extensions: 167296
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)