Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1562
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12790-1|CAA73326.1| 1087|Homo sapiens Supt5h protein protein.         51   3e-06
U56402-1|AAC51102.1| 1087|Homo sapiens SUPT5H protein.                 51   3e-06
BC024203-1|AAH24203.1| 1087|Homo sapiens suppressor of Ty 5 homo...    51   3e-06
AF040253-1|AAD02179.1| 1087|Homo sapiens transcription factor Ta...    51   3e-06
AB209257-1|BAD92494.1| 1116|Homo sapiens suppressor of Ty 5 homo...    51   3e-06
AB000516-1|BAA24075.1| 1087|Homo sapiens DSIF p160 protein.            51   3e-06

>Y12790-1|CAA73326.1| 1087|Homo sapiens Supt5h protein protein.
          Length = 1087

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533  VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
            + P    +VKVI GEDR+A G L+SI+ ++G+V+   D+ +KI+ LR L K+
Sbjct: 1033 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084


>U56402-1|AAC51102.1| 1087|Homo sapiens SUPT5H protein.
          Length = 1087

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533  VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
            + P    +VKVI GEDR+A G L+SI+ ++G+V+   D+ +KI+ LR L K+
Sbjct: 1033 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084


>BC024203-1|AAH24203.1| 1087|Homo sapiens suppressor of Ty 5 homolog
            (S. cerevisiae) protein.
          Length = 1087

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533  VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
            + P    +VKVI GEDR+A G L+SI+ ++G+V+   D+ +KI+ LR L K+
Sbjct: 1033 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084


>AF040253-1|AAD02179.1| 1087|Homo sapiens transcription factor Tat-CT1
            protein.
          Length = 1087

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533  VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
            + P    +VKVI GEDR+A G L+SI+ ++G+V+   D+ +KI+ LR L K+
Sbjct: 1033 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084


>AB209257-1|BAD92494.1| 1116|Homo sapiens suppressor of Ty 5 homolog
            variant protein.
          Length = 1116

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533  VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
            + P    +VKVI GEDR+A G L+SI+ ++G+V+   D+ +KI+ LR L K+
Sbjct: 1062 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1113


>AB000516-1|BAA24075.1| 1087|Homo sapiens DSIF p160 protein.
          Length = 1087

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533  VLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDD-IKIMQLRHLCKM 381
            + P    +VKVI GEDR+A G L+SI+ ++G+V+   D+ +KI+ LR L K+
Sbjct: 1033 ITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,415,105
Number of Sequences: 237096
Number of extensions: 890519
Number of successful extensions: 2190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)