Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1560
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   4.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.2  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   8.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.1  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 311 IDLCVRCYPRGGARYPIR 364
           +DLCVR  P     YP R
Sbjct: 15  LDLCVRKRPHSPEPYPPR 32


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 253 LSPATKPVLLTNKRGHAQG 309
           LSP  +P+L+T ++  A+G
Sbjct: 240 LSPVHEPLLITTEKLAAEG 258


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 313 NVLERGLFC 287
           N +ERGLFC
Sbjct: 128 NCIERGLFC 136


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -3

Query: 244 LRSPTKTTCLPLNFFSSSRTSLIWIF*KAFSLG 146
           L +PT T      F+ + + +++W+      LG
Sbjct: 31  LTTPTPTDINSFYFYKTEQFTVLWVLFTMIVLG 63


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 451  RLSWVTPGVFPGHDVVK 401
            R+SWV+P +   + V+K
Sbjct: 1118 RVSWVSPPLTAANGVIK 1134


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 41 RNQLRPQSPTSGA 79
          R Q++PQSP+S +
Sbjct: 19 RMQIKPQSPSSSS 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 41 RNQLRPQSPTSGA 79
          R Q++PQSP+S +
Sbjct: 19 RMQIKPQSPSSSS 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,913
Number of Sequences: 336
Number of extensions: 2391
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)