Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1560
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   125   4e-30
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.1  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    26   2.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  125 bits (301), Expect = 4e-30
 Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 2/110 (1%)
 Frame = +3

Query: 18  ISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 191
           ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP P LKAF K Q RL R
Sbjct: 22  VAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTR 81

Query: 192 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 341
           ELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AILE
Sbjct: 82  ELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILE 129


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 262 LGLGRILRSPTKTTCLPLNFFSSSRTS 182
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 235  ETVRSCLSPATKPVLLTNKRGHAQ 306
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 132 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 224
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 442 WVTPGVFPGHDVVKRRPVNCNTTHYRANWVPGP 344
           WV  G+F   + V   P +   +HY+ N V GP
Sbjct: 87  WVNSGIFHSFNTVLNTPDDVWNSHYKTN-VLGP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,257
Number of Sequences: 5004
Number of extensions: 41443
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)