Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1560
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   108   2e-24
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   101   3e-22
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     69   3e-12
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   1.6  
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    29   2.7  
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    29   2.7  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   4.8  
01_05_0775 + 25069960-25070023,25070896-25071263                       27   6.3  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   8.4  
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141...    27   8.4  
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872           27   8.4  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  108 bits (260), Expect = 2e-24
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
 Frame = +3

Query: 6   FETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQI 179
           FE S++QA  +LE  N +LK++L++LYI  A ++++  N+K+++I+VP    KAF+KI +
Sbjct: 19  FEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHV 78

Query: 180 RLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 341
           RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT+V+D ILE
Sbjct: 79  RLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILE 128


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  101 bits (242), Expect = 3e-22
 Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
 Frame = +3

Query: 24  QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 197
           QA  +LE  N +LK+ L++LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 198 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 341
           EKKFSGK VV V  R+I+  P   + V     RPR+RTLT+V+D ILE
Sbjct: 98  EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILE 141


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 39/88 (44%), Positives = 57/88 (64%)
 Frame = +3

Query: 78  LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 257
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 258 PSHKTRVANKQKRPRSRTLTSVYDAILE 341
           P +K    +    PR+RTL +V+D ILE
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILE 113


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 292 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 176
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 30  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 164
           LVE+    D   ++ + Y+     + L++K  +++Y+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157


>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 30  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 164
           LVE+    D   ++ + Y+     + L +K  ++IY+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 30  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 164
           LVE+    D   ++ + Y+     + L +K  +++Y+   K+  F
Sbjct: 80  LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124


>01_05_0775 + 25069960-25070023,25070896-25071263
          Length = 143

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 335 PRGGARYPIRPIVSRITIHWPSFYNVVTWENPWRYPT*SSCSTFP 469
           P    R  +   VS +  HW S     +W   WR P   + +T P
Sbjct: 24  PVESRRLKVWAFVSDVRGHWASASPAQSWSRGWRCPLLPAAATSP 68


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 302  AWPLLFVSNTGFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 150
            AW  L +S++  ++     L +S KD+M   +L FE  D+P +       F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212


>04_04_1216 +
           31811403-31812267,31813187-31813877,31813981-31814131,
           31814289-31814351,31814590-31814664,31814934-31815032
          Length = 647

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 475 EKGECAARRLSWVTPGV-FPGHDVVKRRPVNCNTTHYRANWVPG 347
           + G CAA    WVTP    P    V RR VN        +W+ G
Sbjct: 521 QTGRCAAENDRWVTPNKRMPVATQVGRRRVNPAGMSGSGHWLTG 564


>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
          Length = 91

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 27  ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 137
           A++E+E N DL +    L  T+  E   H + S++IY
Sbjct: 2   AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,214
Number of Sequences: 37544
Number of extensions: 302339
Number of successful extensions: 888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)